Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g395 ATGTTTGCTTGTCCTACTTGTGCAGATTGCCCTTTGGATTTGAGTGGGTCAAATTTTACTCTGGTGGCCTCTGTATGCGCTAATAAAGTTGATAGAGGAAAGTGCTGTCGCTATATTAATGCCTTTATTGCAATTTCTGTTGCTCGTTATGCAAATAAAACTAGTACCTTGGGGGTTGCTTCAAATTTATCTGATATTTGCCTTCATTCAATATCGGAGACCTTAGAACTATATGGAGTTCCACCAAATGCAACAGTTTTCTGCGGGTTTGGGACGAAGATTCCTGTTAATTATGATTGTAAGGGTCGAACAACTGTGGTGCAGATGCTGGACCAAGTTGACAACACATCAGCTGTTGATATTGCAAGCTGTTTCTTTGGCATTCAAGGGCTGAGTATTTCTCCAGAACCACCACCACCTGTGCACACTCCTGAGGTGTCTCCTAGTCCATTGGTTGCTGCCAGCCCTAGCCAGGTTGTCTCCACCGTAACCCGTGATGAAAATCACCATCCCTACCACCTCACGTTAATTCCAGGTGTTGGCATTGCAGTCACTGCCGTTGCTGTTATAATGCTGGTAGTCTTGATAATTCTCATACGTAAGAAAAACAGAGAGCTAGAGAATTTTGAGAATACTGGCAAGACTTCTTCAAAAGACTTCCCCCCTCCTCCTCGGCCTATAAGAAAACTTCAAGAAGGTTCTTCATCTATGTTTCAGAAGTATAGCTACAAGGAGACAAAGAAGGCAACTAACAATTTCAACACTATCGTTGGACAAGGAGGATTTGGAACTGTGTACAAAGCTCAGTTTAGGGATGGTTCAGTGGCAGCAGTTAAGCGAATGAACAAAGTTTCGGAGCAGGGGGAGGATGAATTCTGCCAAGAGATAGAGCTTCTTGCCAGACTGCATCATCGTCATCTTGTTGCCTTGAGAGGCTTTTGCATTGAAAAACATAATAGGTTTCTCATGTACGAGTATATGGAAAATGGAAGCTTAAAGGATCATCTTCATTCTCCAGGTAGAACTCCACTAAGTTGGCAGACAAGAATCCAAATTGCAATTGACGTGGCAAATGCTCTGGAGTATCTCCATTTCTATTGTGATCCTCCACTTTGCCACAGAGACATCAAGTCCAGCAACATCTTACTAGATGAGAATTTTGTCGCCAAGGTTGCAGATTTTGGTCTTGCACATGCTTCAAAAGATGGTTCCATTTGCTTTGAACCGGTAAACACTGATGTTCGGGGTACTCCAGGTTATATGGATCCTGAATATGTGATCACTCAAGAGCTCACCGAGAAAAGTGATGTGTACAGTTATGGTGTGGTACTATTGGAGCTTGTGACTGCAAGACGAGCGATACAAGACAACAAGAATTTGGTAGAATGGTCCCAAATATTCATGGCATCAGAATCAAGACTAGCCGAACTAGTGGACCCCAGTATTGGGGACTCCTTTGATTTTGATCAGCTTCAAACAGTTGTGACGATTGTGAGATGGTGCACACAAGGAGAAGCGAGAGCTAGGCCTTCAATTAAACAAGTCCTAAGGCTTTTGTATGAGAGTTCAGATCCAATGCATAATGGGTTTGTGCAAGCTGTGGAAGACGAAGAGGGTGATGGGATTTTTCACAGTGGGGATGGGCGATGTCTTGCTTCTTCTTCAAGTACATCTAGGTCATATTGTAGTAGAAGCTTTTTACTTGAAAATGGCTCTCCACAATCTCCTTCTGGTATAAATATATTAGAAATGATGTATAATTTTATTCTTTTGGCTTGTGTATTGACATTAAGCATTGTGGGAATGCAACAATTTCTCATCATTGTTATTGGAACAGTCAAAATGGATAATGCAGTTTGA 1860 42.04 MFACPTCADCPLDLSGSNFTLVASVCANKVDRGKCCRYINAFIAISVARYANKTSTLGVASNLSDICLHSISETLELYGVPPNATVFCGFGTKIPVNYDCKGRTTVVQMLDQVDNTSAVDIASCFFGIQGLSISPEPPPPVHTPEVSPSPLVAASPSQVVSTVTRDENHHPYHLTLIPGVGIAVTAVAVIMLVVLIILIRKKNRELENFENTGKTSSKDFPPPPRPIRKLQEGSSSMFQKYSYKETKKATNNFNTIVGQGGFGTVYKAQFRDGSVAAVKRMNKVSEQGEDEFCQEIELLARLHHRHLVALRGFCIEKHNRFLMYEYMENGSLKDHLHSPGRTPLSWQTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKDGSICFEPVNTDVRGTPGYMDPEYVITQELTEKSDVYSYGVVLLELVTARRAIQDNKNLVEWSQIFMASESRLAELVDPSIGDSFDFDQLQTVVTIVRWCTQGEARARPSIKQVLRLLYESSDPMHNGFVQAVEDEEGDGIFHSGDGRCLASSSSTSRSYCSRSFLLENGSPQSPSGINILEMMYNFILLACVLTLSIVGMQQFLIIVIGTVKMDNAV* 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3823722 3830160 + Vvi3g395 Vvi3g395 784070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g395 619 Pfam SPARK 8 119 IPR043891 -
Vvi3g395 619 PANTHER BNAC06G02630D PROTEIN 112 580 - -
Vvi3g395 619 PANTHER BNAC06G02630D PROTEIN 4 111 - -
Vvi3g395 619 PANTHER OS01G0750732 PROTEIN 112 580 - -
Vvi3g395 619 PANTHER OS01G0750732 PROTEIN 4 111 - -
Vvi3g395 619 Gene3D Phosphorylase Kinase; domain 1 234 326 - -
Vvi3g395 619 Pfam Protein kinase domain 255 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g395 619 MobiDBLite consensus disorder prediction 210 231 - -
Vvi3g395 619 Gene3D Transferase(Phosphotransferase) domain 1 327 537 - -
Vvi3g395 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 371 383 IPR008271 GO:0004672|GO:0006468
Vvi3g395 619 ProSiteProfiles Protein kinase domain profile. 251 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g395 619 ProSitePatterns Protein kinases ATP-binding region signature. 257 279 IPR017441 GO:0005524
Vvi3g395 619 SUPERFAMILY Protein kinase-like (PK-like) 235 520 IPR011009 -
Vvi3g395 619 SMART serkin_6 251 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g395 619 CDD STKc_IRAK 257 519 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g395 Vvi4g904 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76571 PF00069 Pkinase 1.30E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g395 - - vvi:100257333 1013.83