Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g432 ATGTCTAGTTGCAAGAGAATAAGGGTCGACACAGATCATATCACCAATGGTAATGAGGCAAAATCTTCTGTCATGGAGAGAGCAGAGAAGGTTCAAAGGAATCTGCCTTCTGAAATCCCTAGCATGATTAAGTCTATGCTACCATCACATGTTACAGGCGGTTTTTGGCTGGGTCTTCCTAAGAAATTCTGCGATGTGCATTTGCCAAAGTATGATACTACAATTATTTTGGTGGATAAAAGGGGGGCTGAATATAAGACAAAGTTTCTTGTGGGAAAGACAGGATTGAGTGGTGGATGGAGAGGATTTTCAATTGCTCATAATTTACTTGAAGGGGATGTTTTGGTTTTTGGTCTGGTCCAACCTACCAAATTCATGGTATACATTGTGAGAACAAATGGTTTTGATGAATTCTATATTCCTCAAGAGAATACTAAGAAGGAGAGCCTATCAGTATCAACTACTGAACTTGGCCTTGCAGCATGTCAGTCAGAAAATGACAGTGATGGGCATGGTTCAGAAGTCTTGGAGAGGATTAGATTCTCAGAATCTGCTGTTGATTTTAAAGAAGTGAAAAGTATGGAAGCTTTCTCCATTCTTGTGAATGGTTTGATCATAAACTCTGAGTTTTCCAAACACCTCCAGACCAAGTACTATGAACTCTGCTGCAGTCAGAAAACTTATCTTCATGATCATCTTCTAGATGGCCTCAACTATAAGCTGGCTGCTGGAATCATTTCAGAGACTGTAAACATTGCTGATGCCATTAGAGCTAGCAAGCTCACCACCTCTAGAGATAATTTTTCTATTTGGAGCAAGACCCTAAAAGCCTTCCAGGAGTTGGGGATGAATGTCGGCTTCTTACGAGCTCGGTTAGACCAACTTATGAGCTTTGGCTTTGTAGAAAACAGGAAGAGAGAAGCTAGGCTTGAAAGAGTTAGTGCAGAAGAGAAGATAAGAGATCTAGAAGGGAGTCTTCTGCATGTCAAAGAAGTGAGAAAGAGGCTTAATGCTGAAATTGAGGCTCTGGATTCGCCTGCTGCAGAGAAGCATGAGATGATGTTCCAGGAACTAGCTAAATCCTCATGGTGA 1092 41.21 MSSCKRIRVDTDHITNGNEAKSSVMERAEKVQRNLPSEIPSMIKSMLPSHVTGGFWLGLPKKFCDVHLPKYDTTIILVDKRGAEYKTKFLVGKTGLSGGWRGFSIAHNLLEGDVLVFGLVQPTKFMVYIVRTNGFDEFYIPQENTKKESLSVSTTELGLAACQSENDSDGHGSEVLERIRFSESAVDFKEVKSMEAFSILVNGLIINSEFSKHLQTKYYELCCSQKTYLHDHLLDGLNYKLAAGIISETVNIADAIRASKLTTSRDNFSIWSKTLKAFQELGMNVGFLRARLDQLMSFGFVENRKREARLERVSAEEKIRDLEGSLLHVKEVRKRLNAEIEALDSPAAEKHEMMFQELAKSSW* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4176728 4178437 - Vvi3g432 Vvi3g432 784107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g432 363 Pfam B3 DNA binding domain 43 132 IPR003340 GO:0003677
Vvi3g432 363 SMART B3_2 42 133 IPR003340 GO:0003677
Vvi3g432 363 CDD B3_DNA 40 131 IPR003340 GO:0003677
Vvi3g432 363 Coils Coil 305 325 - -
Vvi3g432 363 Gene3D - 18 135 IPR015300 -
Vvi3g432 363 MobiDBLite consensus disorder prediction 1 23 - -
Vvi3g432 363 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 13 294 - -
Vvi3g432 363 SUPERFAMILY DNA-binding pseudobarrel domain 37 136 IPR015300 -
Vvi3g432 363 ProSiteProfiles B3 DNA-binding domain profile. 42 133 IPR003340 GO:0003677
Vvi3g432 363 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 294 IPR044837 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g432 Vvi7g1082 ECH
Vvi3g432 Vvi18g781 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14657 PF02362 B3 2.60E-14 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g432 - - vvi:100267610 672.544