Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g822 ATGCAAATCTTCCTTCTTGCTACATTTAGTCAAATTTCAAAGCACAGTGACTCAGCCACCTCGTCACTCGAAAAATCCAACACGAGTGTTTTCGATACATGGACACAGGGCAATTCCGTTCGCAATTTCACTGGAATCGTCTGCAATTCCAATGGGTTTGTTACAGAGATATTGCTTCCTGAGCAACAACTGGAGGGGGTTCTTCCTTTTGATTCCATATGTGAGTTGAAATCGCTTGAAAAGATCGATCTGGGAGCAAATGTTTTGCATGGAGGCATCGGCGAAGGCTTGAAGAATTGCAGTCAGTTGCAGTACTTGGACTTGGGGGTCAATTTTTTTACGGGAACGGTGCCGGAGTTGTCATCTTTGAGTGGCCTGAAATTCTTAAATTTAAACTGTAGCGGATTTTCGGGGAGTTTTCCATGGAAATCACTGGAGAATCTCACCAATCTTGAGTTTTTGAGCCTCGGAGACAATCAATTTGAGAGAAGTTCATTTCCTCTGGAGATTCTGAAGCTCGATAAATTGTATTGGCTTTATCTTACAAACAGCAGCTTAGAAGGACAAGTTCCAGAAGGAATTGGAAATTTGACACAGCTTCAAAATCTCGAACTCTCGGATAATTACCTGCATGGGGAAATTCCGGTGGGAATCGGAAAACTTTCCAAGCTTTGGCAGCTCGAGCTATATGACAACAGGTTTTCTGGAAAGTTCCCGGAAGGATTCGGAAACCTTACGAACCTTTCTCTAGCACAATTGTTCTTGGCTGACAATGAATTTTCTGGTGAATTGCCCGAGGAAATCTCGAAAGCTTCATTGTTAGTGGTTATTGATCTGAGTTCGAACAAGTTTTCGGGTAAAATTCCAGCGACAATCGGAGAATTGAAAGCATTAAACAGTCTTAATCTGCAAGAAAACAAGTTCTCCGGCCCCATTCCAGAGTCCCTAGGCTCGTGTGTTTCCTTAGACGATGTCAACCTCTCCGGTAATTCTCTTTCCGGTGAAATCCCTGAGAGTCTTGGAACTTTATCCACTCTAAACTCCTTAAACCTATCCAACAACCAACTTTCCGGCGAAATTCCCTCGAGTCTGTCATCGCTTAGATTGAGTCTTCTTGATCTAACAAACAATAAGTTGAGCGGCCGCGTACCGGAATCTTTGTCAGCGTATAACGGGAGCTTCTCCGGAAATCCTGATCTGTGCAGTGAGACCATCACGCATTTCCGATCATGCTCGTCGAATCCGGGCTTGTCCGGTGATCTCAGGAGAGTCATCTCCTGCTTCGTCGCCGTAGCAGCCGTCATGCTCATCTGCACCGCATGCTTCATCATCGTCAAAATAAGATCCAAAGATCACGACCGTCTGATCAAATCAGATTCTTGGGATCTGAAATCATACCGTTCGCTGTCCTTCTCCGAATCAGAAATCATCAACTCAATCAAACAAGACAACCTCATCGGCAAAGGCGCATCGGGAAACGTGTACAAGGTTGTCCTCGGGAACGGCACCGAGCTCGCCGTGAAACACATGTGGAAATCAGCCTCCGGCGACAGGAGAGCATGCCGGAGCACGACGGCGATGTTGGGGAAACGTAATAGACGGCCTTCGGAGTACGAGGCGGAGGTGGCGACGCTGAGCTCGGTGAGGCACATGAACGTGGTGAAACTGTACTGTAGCATAACGAGCGAGGACTCGGATCTGCTGGTTTACGAGTACCTGAGGAACGGGAGCTTGTGGGACCGGTTGCACACGTGTCAGAAAATGGAGATGGATTGGGATGTGCGATACGACATCGCGGTGGGGGCCGGTAGAGGATTAGAGTGGGGACACGACGCATGTGATTGCTGGCACCCATGGGTACATAGCTCCCGAGTACGCATACACATGCAAGGTAACGGAGAAGAGCGATGTGTACAGCTTTGGGGTGGTGTTGATGGAGTTGGTGACAGGTAA 1953 47.47 MQIFLLATFSQISKHSDSATSSLEKSNTSVFDTWTQGNSVRNFTGIVCNSNGFVTEILLPEQQLEGVLPFDSICELKSLEKIDLGANVLHGGIGEGLKNCSQLQYLDLGVNFFTGTVPELSSLSGLKFLNLNCSGFSGSFPWKSLENLTNLEFLSLGDNQFERSSFPLEILKLDKLYWLYLTNSSLEGQVPEGIGNLTQLQNLELSDNYLHGEIPVGIGKLSKLWQLELYDNRFSGKFPEGFGNLTNLSLAQLFLADNEFSGELPEEISKASLLVVIDLSSNKFSGKIPATIGELKALNSLNLQENKFSGPIPESLGSCVSLDDVNLSGNSLSGEIPESLGTLSTLNSLNLSNNQLSGEIPSSLSSLRLSLLDLTNNKLSGRVPESLSAYNGSFSGNPDLCSETITHFRSCSSNPGLSGDLRRVISCFVAVAAVMLICTACFIIVKIRSKDHDRLIKSDSWDLKSYRSLSFSESEIINSIKQDNLIGKGASGNVYKVVLGNGTELAVKHMWKSASGDRRACRSTTAMLGKRNRRPSEYEAEVATLSSVRHMNVVKLYCSITSEDSDLLVYEYLRNGSLWDRLHTCQKMEMDWDVRYDIAVGAGRGLEWGHDACDCWHPWVHSSRVRIHMQGNGEERCVQLWGGVDGVGDR* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9439066 9442128 - Vvi3g822 Vvi3g822 784497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g822 650 SMART LRR_typ_2 197 221 IPR003591 -
Vvi3g822 650 SMART LRR_typ_2 343 367 IPR003591 -
Vvi3g822 650 SMART LRR_typ_2 148 173 IPR003591 -
Vvi3g822 650 SMART LRR_typ_2 295 319 IPR003591 -
Vvi3g822 650 Gene3D Ribonuclease Inhibitor 17 165 IPR032675 -
Vvi3g822 650 Pfam Leucine Rich Repeat 346 367 IPR001611 GO:0005515
Vvi3g822 650 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 20 248 - -
Vvi3g822 650 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 249 615 - -
Vvi3g822 650 Gene3D Transferase(Phosphotransferase) domain 1 464 631 - -
Vvi3g822 650 Gene3D Ribonuclease Inhibitor 270 412 IPR032675 -
Vvi3g822 650 Gene3D Ribonuclease Inhibitor 166 269 IPR032675 -
Vvi3g822 650 ProSiteProfiles Protein kinase domain profile. 480 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g822 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 20 248 - -
Vvi3g822 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 249 615 - -
Vvi3g822 650 Pfam Protein kinase domain 482 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g822 650 SUPERFAMILY L domain-like 42 392 - -
Vvi3g822 650 ProSiteProfiles Leucine-rich repeat profile. 345 368 IPR001611 GO:0005515
Vvi3g822 650 ProSitePatterns Protein kinases ATP-binding region signature. 486 508 IPR017441 GO:0005524
Vvi3g822 650 SUPERFAMILY Protein kinase-like (PK-like) 468 613 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g822 Vvi18g1600 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76579 PF00069 Pkinase 4.20E-12 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g822 - - vvi:100248069 739.184