Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g978 ATGGAGGGCATGACGGCTCGAAGCTTTCCATCAATTATCTATGCTCTGGATCCCTTACAGTTGTTCAGTGAGGCTCGGAGTATATTCAGGTTGACGGAAGGAAGGTATTTCATTTGGATAGCAGATTTAATGGGACAAGTGATCTATGGGACAAACACAGCAGCTTTGAGCATAGCTCCGCTCGACAATGGGTTGAGTTGTGGCTCTTGCTATGAGGTTAAGTGCGTGAATGACAGAAAACGGTGCCTGCTTGGCTCCATTGTGATCACAGCCACCAGTTTACGCCCACCAAACAATGCCCTTCCACTTTCAACATCTTCTTCTTCACCGTCTGTGGCTGTTGATTCCGATTTTGATGCGAAGGTGTTTCAGCACAACTTGATGAGGAGTAAGAATTATAATCAGAAAGGATTTGGACACAAAGATGAGACTCTAGAGCTCATGAGTCGTGAGTATACCAGTGACATCATAAAGACGATTCCACTGCTGATCATTCTGATTGTGAGAACAAGGCTGGAAGTTGTGATAACCAGAAGGGGTTTGGTAAGTTCTAAGGAGATAGGAATTCCCACCAAGGCTTATTATGCTGTTGAGGAACAGGCGTGGGATACGCAAAGTCACCTTTGCCATCTCATCTTCTGTGCCAATTATTGGGCCGTCACATTGCCAGGTCACCCGCGGGCGGCAGCTGCCCCCATTACTCCAGACGTTTCCTCGTCCTTTCTCAGGTTCCCTTCTTCCATAAATTCCCTTCCTCACATCCATCGCATTGTCAATTTTCGGCGATTCGCAGCAAATAAAAGACCGCCCATTTTCCTTTCTGAACATTCAATTCATTCGTGTTTGAGTCCCACGACAATGGCTTCCATCAACGCTTCTTGCCCAACAGCAGCTATTTCCCGTTTACGGGCATGCAAAAACTTCAAATTGTTTAATGGACTGCACGGTGTGAATCCCTCTTTGTCAAATTGGTATACATCTGATTTGGCTTTGATTCGGTTGGGTAGCAAATCATCGTTCACTATCAAGGGTGATGGTAGAACTAGAGCTACATTGATATCTGGAGAAGGTGGCCTCCTATCATACTCCAATGGCAATAATGTTGCTGCAATCACCAAGGACCAATCTGTTGGAATTGAGATACAGCCTGATGCAATAGCATTTGGAACGCTTGAAGCAGATACTGCTCCCGCAACTAATGGATTTCCCATTGATAATGATGAATTTGATCTGGATCGTCCCTCAGAAGGTTTTTCTTCCATTCCAGAGGCCATTGAGGACATTCGTCAAGGAAAGATAGTGGTGGTTGTGGATGATGAAGATAGAGAAAATGAAGGGGACCTAATAATGGCAGCTTCACTGGCAACACCTGAAGCTATGGCATTTATTGTGAAGCACGGGACTGGAATTGTTTGTGTGAGCATGAAAGGAGAAGATTTGGAGAGGTTGGAAATTCCTTTGATGGTAACCCAAAAGGATAATGATGAGAAACTTTCTACTGCATTCACAGTGTCAGTGGATGCAAAGCATGGTACAACCACTGGGGTTTCAGCTCGTGATAGGGCAACAACAATATTGGCTCTTGCATCCAGAGATTCAAAGCCTGAAGATTTCAATCGCCCAGGGCATATTTTTCCGTTGAAGTACAGGGAGGGTGGTGTTCTGAAAAGAGCTGGACATACAGAAGCCTCTGTTGACCTTGCTATGCTAGCTGGCTTGGATCCTGTTGCAGTTTTATGTGAGGTTGTGGATGATGATGGTTCCATGGCGAGATTACCAAAGCTTCGCCAATTTGCAGAGAGAGAGAACTTAAAAATCATATCAATTGCTGATTTAATCAGATATAGGCGGAAGAGAGATAAATTAGTGGATCGTTCTGCTGGGGCAAGGATACCTACAATGTGGGGGCCATTCACAGCATACTGCTATCGGTCCATCTTAGATGGGATAGAACATATTGCTATGGTTAAGGGTGAGATTGGTGATGGGCAAGATATTCTTGTGAGAGTACACTCGGAATGCCTCACAGGAGATATATTTGGGTCTGCTAGATGCGATTGTGGAAATCAGCTGGCACTTGCAATGCAACAGATTGAGAAAGCAGGGAAGGGTGTATTGGTGTACCTCCGTGGGCATGAAGGAAGGGGCATTGGTTTGGGACACAAGCTTCATGCTTATAACCTGCAGGATGATGGACGTGATACTGTGGAAGCCAATGAAGAGCTGGGATTGCCTGTTGATTCAAGAGAATACGGCATTGGTGCCCAGATGCTAAGAGATCTGGGTGTTCGAACCATGAAGCTTATGACAAACAACCCTGCAAAGTACATTGGGCTCAAGGGCTATGGTTTGGCAGTTTCTGGCAGAGTCCCACTTCTAACTCCCATTACAAAGGAGAACGGTAGATATTTGGAGACAAAACGCTCTAAAATGGGACATGTCTATGGCTTAGAATTCAATGGTCATCTCACCAATCTTATCAGTGGGAATGGAAAACAGAGCATCAACACCCAACCTGATCCAGTCTCTGACTCGTAA 2538 45.15 MEGMTARSFPSIIYALDPLQLFSEARSIFRLTEGRYFIWIADLMGQVIYGTNTAALSIAPLDNGLSCGSCYEVKCVNDRKRCLLGSIVITATSLRPPNNALPLSTSSSSPSVAVDSDFDAKVFQHNLMRSKNYNQKGFGHKDETLELMSREYTSDIIKTIPLLIILIVRTRLEVVITRRGLVSSKEIGIPTKAYYAVEEQAWDTQSHLCHLIFCANYWAVTLPGHPRAAAAPITPDVSSSFLRFPSSINSLPHIHRIVNFRRFAANKRPPIFLSEHSIHSCLSPTTMASINASCPTAAISRLRACKNFKLFNGLHGVNPSLSNWYTSDLALIRLGSKSSFTIKGDGRTRATLISGEGGLLSYSNGNNVAAITKDQSVGIEIQPDAIAFGTLEADTAPATNGFPIDNDEFDLDRPSEGFSSIPEAIEDIRQGKIVVVVDDEDRENEGDLIMAASLATPEAMAFIVKHGTGIVCVSMKGEDLERLEIPLMVTQKDNDEKLSTAFTVSVDAKHGTTTGVSARDRATTILALASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAMLAGLDPVAVLCEVVDDDGSMARLPKLRQFAERENLKIISIADLIRYRRKRDKLVDRSAGARIPTMWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMQQIEKAGKGVLVYLRGHEGRGIGLGHKLHAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPAKYIGLKGYGLAVSGRVPLLTPITKENGRYLETKRSKMGHVYGLEFNGHLTNLISGNGKQSINTQPDPVSDS* 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15416130 15426803 + Vvi3g978 Vvi3g978 784653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g978 845 Hamap GTP cyclohydrolase-2 [ribA]. 621 817 IPR000926 GO:0003935|GO:0009231
Vvi3g978 845 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 119 IPR007112 -
Vvi3g978 845 PANTHER GTP CYCLOHYDROLASE II-RELATED 312 823 - -
Vvi3g978 845 TIGRFAM ribA: GTP cyclohydrolase II 625 814 IPR000926 GO:0003935|GO:0009231
Vvi3g978 845 CDD GTP_cyclohydro2 622 813 IPR000926 GO:0003935|GO:0009231
Vvi3g978 845 Gene3D DHBP synthase 408 622 - -
Vvi3g978 845 Gene3D - 41 140 IPR036908 -
Vvi3g978 845 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 417 813 IPR016299 GO:0009231
Vvi3g978 845 SUPERFAMILY RibA-like 621 793 IPR036144 -
Vvi3g978 845 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 419 616 IPR000422 GO:0008686|GO:0009231
Vvi3g978 845 Pfam GTP cyclohydrolase II 628 791 IPR032677 -
Vvi3g978 845 Gene3D GTP cyclohydrolase II 623 794 IPR036144 -
Vvi3g978 845 SUPERFAMILY YrdC/RibB 417 619 IPR017945 -
Vvi3g978 845 PANTHER BIFUNCTIONAL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA 1, CHLOROPLASTIC-LIKE ISOFORM X1 312 823 - -
Vvi3g978 845 SUPERFAMILY Barwin-like endoglucanases 49 112 IPR036908 -
Vvi3g978 845 SMART dpbb_1 53 133 IPR007112 -
Vvi3g978 845 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 416 620 IPR000422 GO:0008686|GO:0009231
Vvi3g978 845 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 423 615 IPR000422 GO:0008686|GO:0009231
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g978 Vvi7g896 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g978 K14652 - vvi:100248717 1105.51