Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g173 ATGACTCTGAAGATCACATGGAAGACTATCATGCCAGGTTGTTACAAGACTGAGACCCCTATCGCCGAGTCGAGGAAGAAACCAGTTTTGAAGCAGGGTTCTTTCCAGAGACTATCTCTTTCCGACTTGAGCAACCCCGGTTCCCCGCTCTCCGTCGATGATATATCGAATTCCCTTATTGGTTCCAACCTCTATACCTTCACCCTTGCAGAGCTTAGAGAGATCACACACAACTTTTCGCCCAGTAATCTACTTGGAGAAGGCGGGTTTGGACCGGTTTACAAGGGGTTCATAGACGAAAAGCTTAGGCCAAAGTTGAAGGCTCAGCCTGTAGCTGTGAAATTACTTGACTTGGATGGCCTTCAAGGCCATAGAGAATGGCTGGCAGAAATAATCTTTCTTGGGCAACTGAGGCATCCACACCTTGTTAAACTGATTGGATACTGTTGTGAAGACGAGCACAGGCTTCTGATATATGAGTACATGGCAAGAGGGAGCTTAGAAAATCAACTCTTCAGAAGATATTCTGCTGCCTTGCCATGGTCAGCCAGGATGAAGATCCTGTTCGGAGCAGCCAAGGGCCTGGCCTTCCTCCATGAAGGAGACAAGCCAGTAATATACCGGGATTTTAAGGCTTCCAACATTTTATTAGACCCTGATTACACTGCTAAACTCTCTGATTTCGGGCTAGCGAAGGACGGTCCAGAAGGCGACGAGACTCACGTATCAACCCGAATAATGGGCACACATGGCTATGCCGCTCCTGAGTATATCATGACTGGACATTTGACAACCATGAGTGATGTATACAGCTTTGGAGTTGTGCTGTTGGAGGTAATAAGTGGTAAACGGTCGATGGACAAAACAAGGCCTACTGAATTGGCCTACAAATGTCTGAGCCACCAAGCCAAGGCTAGGCCGGCAATGAGCGATGTGGTGAAGATACTGGAGCCTCTGCAGGACTTTGATGATACTGTGATCAGCCCTTTTGTGTATGTGGTTCCAGCTGAAGGGGAGGTAGGAGATGAGAGTGAAAGCGAGAAGGACATTTCACATCAAGAAATCAAAGAAAGGGACGACGGCCAGCAAAACCGGCCCGCCTGGAGACATAGAATCAAGCTGCCACTGTCTCTAGTGGCTTACTCGGAATCTGCTTTGTATAAAAAATTTAGACATGAGTTGAACACTCAAACATATCAGTAA 1203 47.13 MTLKITWKTIMPGCYKTETPIAESRKKPVLKQGSFQRLSLSDLSNPGSPLSVDDISNSLIGSNLYTFTLAELREITHNFSPSNLLGEGGFGPVYKGFIDEKLRPKLKAQPVAVKLLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEDEHRLLIYEYMARGSLENQLFRRYSAALPWSARMKILFGAAKGLAFLHEGDKPVIYRDFKASNILLDPDYTAKLSDFGLAKDGPEGDETHVSTRIMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLEVISGKRSMDKTRPTELAYKCLSHQAKARPAMSDVVKILEPLQDFDDTVISPFVYVVPAEGEVGDESESEKDISHQEIKERDDGQQNRPAWRHRIKLPLSLVAYSESALYKKFRHELNTQTYQ* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1690952 1693342 + Vvi4g173 Vvi4g173 784952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g173 400 MobiDBLite consensus disorder prediction 338 366 - -
Vvi4g173 400 Gene3D Transferase(Phosphotransferase) domain 1 162 328 - -
Vvi4g173 400 Pfam Protein tyrosine and serine/threonine kinase 83 308 IPR001245 GO:0004672|GO:0006468
Vvi4g173 400 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Vvi4g173 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vvi4g173 400 MobiDBLite consensus disorder prediction 345 366 - -
Vvi4g173 400 ProSiteProfiles Protein kinase domain profile. 79 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g173 400 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL12-RELATED 25 292 - -
Vvi4g173 400 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL12-RELATED 293 354 - -
Vvi4g173 400 SUPERFAMILY Protein kinase-like (PK-like) 66 336 IPR011009 -
Vvi4g173 400 PANTHER OS01G0588500 PROTEIN-RELATED 293 354 - -
Vvi4g173 400 PANTHER OS01G0588500 PROTEIN-RELATED 25 292 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g173 Vvi11g76 ECH
Vvi4g173 Vvi9g83 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76606 PF07714 PK_Tyr_Ser-Thr 1.80E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g173 - - vvi:100262822 787.719