Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g247 ATGGAGCCTGTTCCAAGCGGCAACCTGCCTCCTGGCTTTGATTCATCGTCATGCCGCAGTGTTTATGTAGGTAATATTCATGTAAATGTCACTGAGAAACTTCTTGCAGAAGTTTTCCAAAGTGCTGGTCCTCTTGCTGGATGCAAACTCATTAGAAAGGATAAGTCGTCATATGGTTTTGTGGACTACCTTGATCGAGCATCTGCTAGTCTTGCAATAATGACATTGCATGGACGTCAAGTTTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAGTGGCCAGAGGGAAGACACGTCAGGGCACTTTAATATATTTGTTGGTGATTTGAGCCCAGAGGTTACTGACGCAACTTTATATGCCTGCTTCTCAGTTTTTGCTAGTTGTTCAGATGCAAGGGTCATGTGGGATCACAAAACTGGACGGTCAAAAGGATATGGCTTTGTTTCTTTCCGTAATCAGCAGGATGCACAGAGTGCCATCAATGACTTGAGTGGTAAATGGCTTGGGAATAGGCAAATAAGATGCAACTGGGCAACTAAAGGTGCTGGCTTTAATGAGGACAAGCAGGTTAATGAAAATCAAAACGCAGTTGTACTTACTAATGGATCTTCAGATGGAAGTCAAGAGAATACAAATGAGGAGGCCCCTGAAAATAATCCAGCATACACTACTGTCTATGTTGGCAACCTTTCTCATGAGGTAACTCAAGCTGAACTTCACTGTCAGTTTCATGCTCTTGGAGCTGGGGTTATTGAGGAAGTGCGCATCCAGAGGGATAAAGGTTTTGGGTTTGTCAGGTACCACACCCATGAAGAAGCAGCCTTGGCCATTCAGATGGCGAATGGAAGGATAGTTCGTGGAAAATCCATGAAGTGCTCATGGGGTAGCAAGCCAACGCCTCTCGGTACAGCTTCTAATCCCCTACCTCCTCCAGCTCAACCATATCAGATCCTTCCTACTGCTGGCATTAACCAAGGCTACTCACCAGCAGAGTTGTTGGCCTATCAGCGCCAGCTTGCCTTAAGCCAAGCTGCTGCATCCAGCCTCTCGGGCCAAGCTCTTATGCAGATGACTGGACATCATGGTCTAGCTGCAGGTTCCATGGGTGTGAGCTCTGGTGGCACCCAAGCTATGTATGATGGATATCCCAATAATTCATCAGGCCAGCAGCTGATGTATTACCATTAA 1194 46.15 MEPVPSGNLPPGFDSSSCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKDKSSYGFVDYLDRASASLAIMTLHGRQVYGQALKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVFASCSDARVMWDHKTGRSKGYGFVSFRNQQDAQSAINDLSGKWLGNRQIRCNWATKGAGFNEDKQVNENQNAVVLTNGSSDGSQENTNEEAPENNPAYTTVYVGNLSHEVTQAELHCQFHALGAGVIEEVRIQRDKGFGFVRYHTHEEAALAIQMANGRIVRGKSMKCSWGSKPTPLGTASNPLPPPAQPYQILPTAGINQGYSPAELLAYQRQLALSQAAASSLSGQALMQMTGHHGLAAGSMGVSSGGTQAMYDGYPNNSSGQQLMYYH* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2407999 2428839 - Vvi4g247 Vvi4g247 785026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g247 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 93 IPR000504 GO:0003723
Vvi4g247 397 SUPERFAMILY RNA-binding domain, RBD 5 97 IPR035979 GO:0003676
Vvi4g247 397 Gene3D - 98 192 IPR012677 -
Vvi4g247 397 MobiDBLite consensus disorder prediction 201 222 - -
Vvi4g247 397 CDD RRM2_PUB1 105 179 - -
Vvi4g247 397 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 1 394 - -
Vvi4g247 397 CDD RRM3_TIA1_like 225 299 - -
Vvi4g247 397 SUPERFAMILY RNA-binding domain, RBD 212 301 IPR035979 GO:0003676
Vvi4g247 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Vvi4g247 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 299 IPR000504 GO:0003723
Vvi4g247 397 SUPERFAMILY RNA-binding domain, RBD 98 186 IPR035979 GO:0003676
Vvi4g247 397 SMART rrm1_1 20 89 IPR000504 GO:0003723
Vvi4g247 397 SMART rrm1_1 105 178 IPR000504 GO:0003723
Vvi4g247 397 SMART rrm1_1 226 295 IPR000504 GO:0003723
Vvi4g247 397 Gene3D - 202 303 IPR012677 -
Vvi4g247 397 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 394 - -
Vvi4g247 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Vvi4g247 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 292 IPR000504 GO:0003723
Vvi4g247 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Vvi4g247 397 Gene3D - 5 97 IPR012677 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g247 Vvi9g64 ECH
Vvi4g247 Vvi9g255 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g247 K13201 - vvi:100245579 777.319