Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g451 ATGTTTAATAAATTAAGTGGGTGGTTTGATACTACTATGGATTCTCCTGAAACTGCTAAGACCACCACCTCCACAACCAAATCCTCTTCACAATCTCCCCCACTTCAAGTCACTACATTTCCTCCAATTCCCCCTCCTGAAACTGCTGCAACCACCGCCACTTCTTCATCAAAATCTCCTCCAGTTCAAGACTCCCCTTTCTCTACATACGTTAGCAACCTGTCTCCTATAAAACCTGTCAAGGCTGCACACGTTGCACAAGAATTCCCAGGACTTTGTTCTCCTCCTCTTGTGTTTACATCACCACGGATAAATCCGCATCACGAAACAAGTTTTCTAAAAAGGACGCAATGCCATCATGTACAGTTTTCAACAGACAATGGGAGAGGCAAGAAAGTGGCCGCTGTTTCAAATATTTCTGATAATGCAAATGCCCAATTGAACACTGGGTTGGTAGCTAAAGTTGAGAAGGAATGTGATATTAAGGACTCTGTGCAAGACCAACCCTGCAGCTCCTCTGGGTGTGTTGATGAATACTTGGCTGATACCATGGAGGCAGACTCTGCAATTTCTGCACATTCAGCTGGTTCTTGTTTGAATCAATCTAATGATGCACTTCAATCATTACAAAGTGGTTTTACAGACTCAAACAATACCACCGCAAGATTTTTTGACAAAAAAAATATCAGTGTAGATAAAAAGAGGGAACTGGATGCATCTCCAGCTTTGTTAGAGCAAGCTGAAGATGAACTTCAAGGAAAGTCAGCATTCAATGTTAAGCCAGTGCCAACTGATGGAAAGCAAAGAGGTGGTGAAAGGACATCTACAGAAGTCCTAAATGTAGAATCTAATTTGTCTGTGGACTATGCTTCTGAACAGTTATATGAAAGTTCAGTGGCTCAGTTTCTGTTTGTTAAACTCTGTTATAATATATCACAAGATGTTAAATTGCAGACTGCAGGAGGCAATCAGGATGAACTGGATTGCACTCCCCATTTGATGCCCGAAGCATTGCAGATTGTACGGATGGATGAAAATTGTGCTCAGCAAGCAGGAGAAATCTCAAATGGGCCTGTTGAGAACACAGTGCTGCATGATCCTGAGGCCAGTCAGCAGACTCAGCACCAACGTGGCATGCTTAGACGGTGCCTTCAATTTGGAGAGGCTCAATTGAATATTATCACAAACAACCCTAGTTTTTCATATCCAACAAGTATTGCAGCCAATTCAAGATTACTTGCTACTCCTAGTGATTCAGAGCTTCCAGAATCCTCATGTGTGGATTTAACTACAACTTCCAGCAACAAGCAATTGGCTTACTCACAACCAGTAACTGCCATGCTTCCTCCTCAAAACAGTGGAAACTCGTCCCTAGCAGGTTCCAAGCCATCTGGTATTGGCCTGCACTTAAATAGCATTGTCAATGCTGTGCCCATGGGTTTCAGTTCTACTACAAGCCTGAAAGTAGAAGAGAAAGATTATTCGAGTGCATGGAGAATAAGTGACTCAATTCCGTCAAATGTAATAGAGAATTCAGCTGGTACTGAAGATAGGAGAAACGAAAATAAGGCTTCAATTGCAATGAGTTCTGCTACTTCTCAGTCTTCCCATGGAATTCAACCAACCAAGCCCAAAAAAGAGAAGGCAAGCTTAAGCTTCCATGTTATTTCTCACAATTTTGACTTTTCAGCATCAAGCACCAATGATGGAGACGGTTGCAAACGTTGCAATTGTAAGAAGTCCAAATGCTTGAAACTGTATTGTGATTGTTTTGCTGCCGGAATCTATTGCGCTGAAGGTTGTGCTTGCGTAGGATGCTTCAACAGAGCTGAATATGATGATAGAGTTCTTGAGACACGGAAACAAATTGAATCTCGAAATCCTCTCGCATTTGCTCCAAAGATTGTCCCACCCGTCAATGGGTCTCCAATAAATAGTGGGGAAGATGGAAGGTCAACACCATCATCAGCGAGGCACAAGAGAGGTTGCAATTGCAAGAAGTCAATGTGTTTGAAAAAATACTGCGAGTGCTATCAGGCTAATGTTGGATGTTCTGCTGGATGCCGTTGTGAGGGTTGTAAAAATGTCTATGGCAGGAAGGAAGAATATGGTGCATTCAAAGAAATGATGAGCAGAAGAGCCAATGATGATAGATTGGAAAGTTCTTTTGACAAGAAGCTGGAAATGGTTGCAGCAAGGAGTGACTTCTTACGCCCTGAGCTTTGTAATCCACATAACATGACACCCATGACGCCATCATTTCAGTGCTCAGACCATGGAAACGATGCAGCAAATTTTCAAATTCCTTCCAGAAGATATGCTCAATCACCAGAATCTGATTTTTCGATCTTATCGTCTTATGGAAAATCCCCAGTATCTCCAAAGAATTCAGATAGTCACAATATTCTCCCTGAACCAGGAAAAGAAATTTGGGATATGGCTTGTTATGAGCATGAATTTGAGTATGGTAATGCAGAAAAAGTAGATCAATTCACTCCAGGATCCATGAATCCTTCAGCTTCATCCAAAACAAGTGGATTGACAAATGTCTCAAGAGGCCAATTATGTCCTGGAAGTGACCATCTTGTGTCAGGTGGCTCCCTTCGTTGGCGTAGTTCACCAATTCCACCATCAACTCAGTTAGGTGAGACCAAAATTTTCCAGGGACTTGAATCTGACAATGAGCTTTATGACATACTGGAAGATGACACACCCACGATACTGAAAGATGCTTCTACTCCCACCAAGGCAGTAAAAGCAAGCTCCCCTAAGCAGAAACGGGTTTCTCCTCCAAAAATTCAATCGCATGAGCGTGGGTCATCCAGCTCCTTGGCAATCTTGAAAAGTGGCCGGAAGTTCATATTGCAGGCTGTTCCTTCTTTCCCACCTCTCACCCCATGCATTGATACCAAAAGCAGCTCCCATCAAAATTCAAGTGATCCTCAAGATAGTATTATGGATATGGGTGCTAAAATTGCCATTTGCAGAACTCTAAGTTGCGGATTGGAAGATTGTGTCAGGATTCCAAGTGACAACCATTTGCAAGGATTAATGGGCAAAGATGGAAAACGGAATTTAGTCAGACAGCTGCTGCTCCTCATTCATGTTCTCTTTTTCTTACTCTTTTTTTTCCGCATTTTTGAGCATTTCTTTCTTGTTCAATTGCATGTTTCTAGTAATGGCAACATTTCCCAGATGGTCTCCTTCTGCTGGAGGTATGGTAGCTGTTATTCTTTCAGCAGATGCATTGGTTTCTCTCATTTTCTGACAAATATTGAAAAATAA 3285 42.04 MFNKLSGWFDTTMDSPETAKTTTSTTKSSSQSPPLQVTTFPPIPPPETAATTATSSSKSPPVQDSPFSTYVSNLSPIKPVKAAHVAQEFPGLCSPPLVFTSPRINPHHETSFLKRTQCHHVQFSTDNGRGKKVAAVSNISDNANAQLNTGLVAKVEKECDIKDSVQDQPCSSSGCVDEYLADTMEADSAISAHSAGSCLNQSNDALQSLQSGFTDSNNTTARFFDKKNISVDKKRELDASPALLEQAEDELQGKSAFNVKPVPTDGKQRGGERTSTEVLNVESNLSVDYASEQLYESSVAQFLFVKLCYNISQDVKLQTAGGNQDELDCTPHLMPEALQIVRMDENCAQQAGEISNGPVENTVLHDPEASQQTQHQRGMLRRCLQFGEAQLNIITNNPSFSYPTSIAANSRLLATPSDSELPESSCVDLTTTSSNKQLAYSQPVTAMLPPQNSGNSSLAGSKPSGIGLHLNSIVNAVPMGFSSTTSLKVEEKDYSSAWRISDSIPSNVIENSAGTEDRRNENKASIAMSSATSQSSHGIQPTKPKKEKASLSFHVISHNFDFSASSTNDGDGCKRCNCKKSKCLKLYCDCFAAGIYCAEGCACVGCFNRAEYDDRVLETRKQIESRNPLAFAPKIVPPVNGSPINSGEDGRSTPSSARHKRGCNCKKSMCLKKYCECYQANVGCSAGCRCEGCKNVYGRKEEYGAFKEMMSRRANDDRLESSFDKKLEMVAARSDFLRPELCNPHNMTPMTPSFQCSDHGNDAANFQIPSRRYAQSPESDFSILSSYGKSPVSPKNSDSHNILPEPGKEIWDMACYEHEFEYGNAEKVDQFTPGSMNPSASSKTSGLTNVSRGQLCPGSDHLVSGGSLRWRSSPIPPSTQLGETKIFQGLESDNELYDILEDDTPTILKDASTPTKAVKASSPKQKRVSPPKIQSHERGSSSSLAILKSGRKFILQAVPSFPPLTPCIDTKSSSHQNSSDPQDSIMDMGAKIAICRTLSCGLEDCVRIPSDNHLQGLMGKDGKRNLVRQLLLLIHVLFFLLFFFRIFEHFFLVQLHVSSNGNISQMVSFCWRYGSCYSFSRCIGFSHFLTNIEK* 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4595143 4612704 - Vvi4g451 Vvi4g451 785230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g451 1094 MobiDBLite consensus disorder prediction 1 67 - -
Vvi4g451 1094 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 661 695 IPR005172 -
Vvi4g451 1094 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 574 609 IPR005172 -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 49 67 - -
Vvi4g451 1094 SMART CXC_2 571 612 IPR033467 -
Vvi4g451 1094 SMART CXC_2 658 699 IPR033467 -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 1 36 - -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 524 540 - -
Vvi4g451 1094 ProSiteProfiles CRC domain profile. 572 698 IPR005172 -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 907 941 - -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 508 544 - -
Vvi4g451 1094 MobiDBLite consensus disorder prediction 908 922 - -
Vvi4g451 1094 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 13 976 IPR044522 GO:0003700
Vvi4g451 1094 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 13 976 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g451 Vvi11g318 ECH
Vvi4g451 Vvi9g483 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14752 PF03638 TCR 6.60E-11 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g451 K21776 - vvi:100261127 1786.93