Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g904 ATGACTGTCTCTCTCCTCTCCTTTGTCTTGCTTCTCTTCATTTCTTCAACCAACCATATCACAGCTCAATCACCAGCCACCCCAGTTACAAACTTCTCGTGCACCACAGACTCACCTGCCTCATGCCAAACATATGTCATCTACCGTGCTCAGGCACCTGGATTTTTGGACGTGGGAAATATATCTGATCTGTTTGGGATCAGTCGCTTATCAATTGCAGAAGCAAGCAATCTGGCTTCTGAGGAAGCTCGGTTGAGTCCAGACCAGCTTTTACTGGTACCTATCTTGTGTAGCTGCACTGGAAACCATTATTTTGCAAACATTACTTATAAGATCAAGACAGATGATAGCTTCTACTTCGTTTCAGTCACTGTGTTTGAAAATCTCACCAATTATAATGCAGTGGAAGCTTTGAACCCTGGTCTGGAACCGACCACCTTGCAGGTTGGTGTTGAAGTAGTCTTCCCTTTGTTCTGTAAGTGTCCATCGAAGTCACATTCGGATAAAGGCATCAACTATCTTATTACTTATGTGTGGCAACCTGGTGATGATGTATTGCTTGTGGGTACTAACTTGAAAGCATCCCCAGTTGATATCAGAGATGAAAATAACAATCTGAACTTTAGTGCTTCGGTGGACCAGCCAGTGTTGATCCCTGTTTCACAACCTCCACTTCTCACTCAGCCTGAAAGAAGGGCATCCAAAGGCAGGTGGATCCTTGCTTTGGTTTTGAGCACAGGAGCTCTTTTAATTTTCCTTTTGGTGAGCCTGCTGGTCTACACTGGTTTGATCAGGAAAAAGAAGACTCTGGATCATTCAGAGTCCTCTTTGGAGACCACTGATCTCATTAAACTACTTCCTGGGGTTTCAGGCTACCTTGGCAAGCCAATCATGTACGAGACTAAAGTCATTATGGAGGCAACAATGAACCTCAATGAACACTACAGGATTGGAGGATCAGTATACAGGGCCACAATCAATGGTCAGGTTGTTGCTGTAAAGAAAACCAAAGAAGATATCACAGAGGAATTAAGGATACTGCAGAAAGTAAATCATGGGAATCTGGTCAAATTGATGGGCGTCTCATCCGATGCTGATGGGAATCGCTTCTTGGTTTATGAATTTGCTGAAAATGGTTCACTGGATAAGTGGTTGCACCCAAAGCCTTCTTCCCCTTCAAGCTCTGTAGCTTTCCTCACATGGAGCCAGAGGATACAGGTAGCCCTAGATGTGGCCAATGGCCTGCAATATATGCATGAGCATACTCAACCAAGCGTTGTTCACAGGGATATCAGAGCAAATAATATACTTCTAGACTCCAGGTTTAAGGCCAAGATCGCAAACTTCTCTATGGCTACACCTGCTATGAACTCTATGATGCCAAAAGTTGACGTTTTTGCTTTTGGGGTTGTTCTATTGGAGTTGCTTTCAGGGAAGAAAGCCATGCAAATGAGAGCCAATGGTGAGATTGTTATGCTGTGGAAGGATATAAGGGAGATCTTAGAAGTCGAAGACAAGAGAGAAGACAGGATAAGGAGGTGGATGGATCCAACATTGGAGAACTTTTATCCCTTTGATGGTGCTCTCAACTTGGCAGGGTTGGCAAGGTCATGCACACAGGAGAAGTCTTCAGCAAGGCCAAGCATGGCAGAAATCGCCTTTAATCTCTCTGTCCTCAGTCAGACATCTTCTGAAACCTTGGAAAGGTCCTGGACTCAGGGGTTTGAACCAGAAGAAACAATACAAATAATCAATCCGGTCATAGCTCGTTGA 1773 44.22 MTVSLLSFVLLLFISSTNHITAQSPATPVTNFSCTTDSPASCQTYVIYRAQAPGFLDVGNISDLFGISRLSIAEASNLASEEARLSPDQLLLVPILCSCTGNHYFANITYKIKTDDSFYFVSVTVFENLTNYNAVEALNPGLEPTTLQVGVEVVFPLFCKCPSKSHSDKGINYLITYVWQPGDDVLLVGTNLKASPVDIRDENNNLNFSASVDQPVLIPVSQPPLLTQPERRASKGRWILALVLSTGALLIFLLVSLLVYTGLIRKKKTLDHSESSLETTDLIKLLPGVSGYLGKPIMYETKVIMEATMNLNEHYRIGGSVYRATINGQVVAVKKTKEDITEELRILQKVNHGNLVKLMGVSSDADGNRFLVYEFAENGSLDKWLHPKPSSPSSSVAFLTWSQRIQVALDVANGLQYMHEHTQPSVVHRDIRANNILLDSRFKAKIANFSMATPAMNSMMPKVDVFAFGVVLLELLSGKKAMQMRANGEIVMLWKDIREILEVEDKREDRIRRWMDPTLENFYPFDGALNLAGLARSCTQEKSSARPSMAEIAFNLSVLSQTSSETLERSWTQGFEPEETIQIINPVIAR* 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17481238 17483065 + Vvi4g904 Vvi4g904 785683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g904 590 SMART tyrkin_6 311 556 IPR020635 GO:0004713|GO:0006468
Vvi4g904 590 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 10 590 - -
Vvi4g904 590 Gene3D Phosphorylase Kinase; domain 1 291 375 - -
Vvi4g904 590 ProSiteProfiles Protein kinase domain profile. 238 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g904 590 Gene3D Transferase(Phosphotransferase) domain 1 376 458 - -
Vvi4g904 590 Pfam Protein tyrosine and serine/threonine kinase 332 456 IPR001245 GO:0004672|GO:0006468
Vvi4g904 590 ProSitePatterns Tyrosine protein kinases specific active-site signature. 426 438 IPR008266 GO:0004672|GO:0006468
Vvi4g904 590 Gene3D Transferase(Phosphotransferase) domain 1 459 576 - -
Vvi4g904 590 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 590 - -
Vvi4g904 590 SUPERFAMILY Protein kinase-like (PK-like) 319 556 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g395 Vvi4g904 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76637 PF07714 PK_Tyr_Ser-Thr 9.70E-24 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g904 - - vvi:100259809 1144.41