Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g943 ATGACGACTCGAATCGCTCCGGGCGTCGGAGCCAACTTGCTAGGCCAACACTCCGCCGAGAGGAACCAGGATGCCACTGCTTACGTCGGCAATCTCGATCCTCAGGTAACCGAGGAGTTACTGTGGGAGTTGTTTGTTCAAGCGGGCCCTGTTGTTAATGTATATGTTCCCAAAGATAGAGTGACAAATCTGCACCAAGGATATGGATTTGTAGAATTTCGAAGTGAAGAGGATGCTGATTATGCAATTAAGGTTCTGAATATGATTAAACTTTATGGGAAGCCAATACGTGTAAATAAGGCATCTCAAGATAAAAAGAGCTTGGATGTTGGAGCAAACCTTTTTGTTGGAAACCTTGATCCTGATGTGGATGAGAAACTTCTGTATGATACTTTCAGTGCATTTGGAGTCATTGTCACAAATCCCAAGATAATGAGAGATCCTGATACAGGAAATTCTCGTGGTTTTGGTTTCGTTAGCTATGACTCTTTTGAGGCATCTGATGCAGCTATTGAGGCAATGAATGGTCAGTATCTCTGCAACCGGCAGATAACTGTGTCCTATGCATACAAGAAAGACACTAAAGGGGAGCGGCATGGTACCCCAGCAGAAAGGGTTTTGGCTGCAAGCAATCCAAGTGCTCCAAAGAGCAGGCCCCACACCTTGTTTGCGAGTGGACCTCCTACACTTCCCAATCCTTCCCACCCATGCAGCTAG 717 45.89 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAPKSRPHTLFASGPPTLPNPSHPCS* 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18012559 18022101 + Vvi4g943 Vvi4g943 785722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g943 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Vvi4g943 238 CDD RRM2_SF3B4 111 193 IPR034159 -
Vvi4g943 238 CDD RRM1_SF3B4 28 100 IPR034158 -
Vvi4g943 238 Gene3D - 16 106 IPR012677 -
Vvi4g943 238 SMART rrm1_1 113 187 IPR000504 GO:0003723
Vvi4g943 238 SMART rrm1_1 26 99 IPR000504 GO:0003723
Vvi4g943 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Vvi4g943 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Vvi4g943 238 PANTHER TRANSFORMER-2-RELATED 1 234 - -
Vvi4g943 238 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 234 - -
Vvi4g943 238 Gene3D - 107 204 IPR012677 -
Vvi4g943 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Vvi4g943 238 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Vvi4g943 238 MobiDBLite consensus disorder prediction 194 238 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g384 Vvi4g943 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g943 K12831 - vvi:100251324 470.7