Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g231 ATGCCCATAAAAAGCTCCTATTCTTTGCTTGGAGATCTACTCTCTCCGATCTCTCTCTCCGCTGCTGGTTTCCATCTCTTCTATAAAAAGATGGGGCTGTCTTTCACCAAACTTTTCAGTCGGCTATTTGCTAAGAAGGAGATGCGCATTCTCATGGTTGGTCTTGATGCTGCTGGTAAAACTACAATTTTGTATAAGCTCAAGTTGGGGGAAATTGTCACCACTATCCCTACCATTGGATTTAATGTGGAGACTGTGGAATATAAGAATATCAGCTTCACTGTCTGGGATGTTGGTGGTCAGGACAAGATTCGACCTTTGTGGAGACACTACTTCCAAAACACGCAAGGGCTTATCTTCGTTGTTGACAGTAATGACCGAGACCGTGTGGTTGAGGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAACTGAGGGATGCTGTGCTGCTTGTGTTTGCAAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCAGAGATAACTGACAAGCTTGGACTTCACTCTCTCCGACAGCGCCACTGGTATATCCAGAGCACATGTGCCACTTCTGGAGAAGGGCTGTACGAGGGACTGGATTGGCTTTCAAACAACATTGCTAACAAGGCTTAG 636 45.44 MPIKSSYSLLGDLLSPISLSAAGFHLFYKKMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2403216 2408128 + Vvi5g231 Vvi5g231 786373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g231 211 CDD Arf1_5_like 48 206 IPR045872 GO:0003924
Vvi5g231 211 Gene3D - 34 211 IPR027417 -
Vvi5g231 211 PRINTS GTP-binding SAR1 protein signature 49 72 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 PRINTS GTP-binding SAR1 protein signature 77 101 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 PRINTS GTP-binding SAR1 protein signature 104 129 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 PRINTS GTP-binding SAR1 protein signature 149 170 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 SMART sar_sub_1 31 207 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 Pfam ADP-ribosylation factor family 35 207 IPR006689 GO:0003924|GO:0005525
Vvi5g231 211 ProSiteProfiles small GTPase Arf family profile. 41 207 - -
Vvi5g231 211 SMART arf_sub_2 31 211 - -
Vvi5g231 211 PANTHER ADP RIBOSYLATION FACTOR-RELATED 31 211 IPR024156 GO:0005525
Vvi5g231 211 PANTHER ADP-RIBOSYLATION FACTOR A1F 31 211 - -
Vvi5g231 211 TIGRFAM small_GTP: small GTP-binding protein domain 46 186 IPR005225 GO:0005525
Vvi5g231 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 209 IPR027417 -
Vvi5g231 211 SMART rab_sub_5 48 210 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g231 Vvi7g439 ECH
Vvi5g231 Vvi14g59 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g231 K07937 - twl:119982669 368.622