Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g496 ATGAGAAGTGGTGATCGTTCGGGCGGTTTGGTGAAGAGTAGGAACGCCTCAGGATGTTTAATTATTAAAAAGAAAGGCGATGGGGTGAGTGGGGCTGGTTCTTCGGGTTCGCAGGGGTTATTAGAATCCAAGAAGGAGAAGAAGAGACCGCGATTGGTTCTTAGCGATTCGGGTTCGAGTGATGAACTGTTAGAATCTCGTCGGCCAAGGGTTCTATCTGGGAGTAGCCAAGCTGGTAATGGTGTAACTGTTTTTAAACAGGGCGTTGAAGAGAGAAATTTTGGTTGCAATGGTGTAGTCGAGAGAAAGAGAAGTAGGTTAGATGTCTTTGAGTTTGACGAGTATGACAGAATTGAGGGGAAAAAGCAGAGGAAGAAGGAACAGATGGATAATGGGGAAGTTGGAGGAAGAGGCTTTTTGGGTTCAAAGCAGGTGCTGCAAAGTAGCAGTCGAAGGGAATTTGAGACAGGTTCAAGCAGACAAGATATTGTGTATAGGAGAAAACATTCTTATTTTGGAAATACAAGTGGCTCATTAGGAGAAAGGAACAGGGGAACTGATTATTCTGAGACTAGCAGTTATGATCCCCAGGAAGCTGAAGGCATTAGACAGGTGTCTAGGCCTGTGGATAGCATGAAGAGGAACATATTGATTCGCCCTTCATCTTATTCAGAAACAAAACTTCATGAGAAACCAGGTTCATTTGTTGGAGCAGAGAAAAAACACCCGAACTTGAGAAAATCATTACCCACTAAGAAGAGTAAAGCCAGCTACTCAGGATCAGAGGACAGAAAGGAAGGAAAAGTTAAGCGTGGTAGTGGCACCGAGAAGCAATTATTACGTGAACGAATAAGGGGAATGCTTGTTAATGCAGGTTGGACAATCGATTATAGACCTAGAAGGAATAGAGACTACCTAGACGCTGTTTACATTAACCCCACAGGAACAGCGTACTGGTCCATCATCAAGGCTTATGATGCTCTCCAAAAGCAAATTGATGATGAGGAGAGTAAATCAAAACCTAAGGATGCAGATGACATTAAGCATGAAGAGAAACTAAGCTCATTCATAAAGCAGAATGGCAAAAAAATTGGCAGATGTACTTTGTTGGTTCGCAATTCTGGCAAGGGACTGAATTTGGAAACTGATGGCTTTGTTCCATATACTGGGAAACGAACTCTTCTGTCTTGGCTTATTGACTCTGGAACTGTGCAGTTAAGTGAGAAAGTGCAGTATATGAATCGCAGACGCACAAAAGTAATGCTGGAGGGATGGATCACAAGAGATGGAATTCATTGTAGATGCTGTAGTAAAATCCTCACAGTTTCAAAGTTTGAAATTCATGCAGGGAGCAAACTTCGTCAGCCATTCCAGAACATAGTTTTGGACTCTGGGGTTTCCCTTTTGCAGTGCCAGGTAGATGCATGGAATAGACAAGAGGAGTCTGAACGTAGTGGTTTCCACCCTATAGATGTTGATGGTGATGATCCTAATGATGACACTTGTGGTATCTGTGGAGATGGTGGGGATTTGATCTGTTGTGATGGGTGTCCCTCAACATTCCATCAGAGCTGCTTAAATATTCAGATGCTTCCATCTGGTGACTGGCACTGCCCTAATTGCACATGCAAATTTTGCGGAATGGCTGATGGGAGTAATGCTGAAGATGATACAACCGTCAGTGAGCTAGTTACTTGCAGTCTATGTGAGAAAAAATATCACACATCGTGCATTCAAGGGGTGGATGCTGTCCTTTCCGATACCAATAATCCATCCACTTCTTTCTGTGGACAGGGGTGCCGGGAGCTCTTTGAACATTTACAGAAGTTTATTGGGGTCAAACAAGAACTGGAGGCAGGGTTTTCATGGTCTCTCATTCATCGCACAGACCCAGGCTCAGATACATCTGTCCGAGGATTTCCACAAAGGGTGGAAAGCAATTCTAAGCTTGCTATTGCACTGACTGTTATGGATGAGTGCTTTTTGTCCATTGTTGACAGGAGGAGCGAGATTAATTTAATCCATAATGTTCTCTATAATCGTGGATCAAACTTTAATCGGCTGAACTACAGTGGTTTCTACACTGCAATTTTGGAGAGAGGTGATGAAATAATCTGTGCTGCATCAATCAGGATCCATGGAACCCAGTTAGCAGAGATGCCGTTCATTGGAACTCGCCATATATATAGGCGCCAAGGGATGTGCCGTCGGCTTTTTTGTGCTATTGAATCGGCTCTTTGCTCTCTCAAAGTTGAGATGCTAATTATTCCAGCTATATCCGAACTCATGCATACATGGACTGTAGGTTTTGGTTTCAATCCTCTTGAAGAATCCCATAAGCAAGAATTGAGGTCCTTGAATATGTTGGTGTTCCCGGGTACAGACATGTTACAGAAGCTGCTTCTGGAGCAAGAAACTGCTGATGGAAACATGACTGCTAGTCCAGGTACAAAGTCAGTTGAATCCAAAGGCAACAATTGTAATACACCTGATTTGGAAAATAAATCTGATATAGATTCATCCAATGGGCATGATTTATCCATCCATAATCATTCCATTTCGCAACATTCAAATGACAGAAATGACAATGTCTGTGCTTCTGACTCTATTTCCCTGACCCCAGCTGTTCCATTGACTAATCCTTCTATCATGAGTGGTGCTTCAGATGCTCTTCATGAACCTGAAATCCAAGGCTCTGGTGAGGAGACGAGATGTTCTAATTCTGAGTCCGGGGACAAGTTGAATGAAGCTACTGAAGCCAAGTGTCCTTCTCCCTCTTATGCAAGTTGCAATGTTCTTGAGATAGAAAAACATGTATTTGATTCTCCTGGCGAGGGTGATATGCATTCTCCTTCTGAGGACAAAGTCGGTGATGCTCGTGACCCAAATGTCCAAGTCCCTGGTGAGGGGACTATATGTTCTAGTTCTCAGTCAAGGAACAAACTAGGCAAACCTGGTAGTGACTTCAACTGTCTATCTGCTTCTGAAGCAAGTCATAATGGAAAAGCCATGGTGGATTCTCCTGTTGAAAGTAACAGTCGGCCCTCTGATGAGTGTGAAGATGGTAATGGTCTAGAAGTAAATGCTGAAGCCCCTGGTGAGGGGACCATTTGTTCTAACTCTCAGCCAAGTTACAAATTACCTGTATCTACTACAGGTATGGACTTTCTCCCTGCTTCTGAAGTGAGTCATGGCATCCTTGAGGTGGAAAAGCTAGTATCAGATTCTCTAGTTGAAGGAAATGTTCTGTCTTGTGCAGAGGGTGAAGCAGGTGATGCTCATGAAGTAAATACCCAGGTCTCTGGTAATGGGATTACAGGTTCTAATTCTTGCTTCAAGGACAAAGTAGCTGAACCTCCTAGTGATGTGAAGCCCCTCTCTCCCTCTGATGAGAGTTTCAATATCGAGTTCAAAAAACCTGTATTGGCTTCTCCTGTAGAGGTCAATATTCAGTCTTCCACCAAGGGTGAAGTAGATGATGCTCATGAAGTAGGTGATTCAGTTGCTTCTGTTGAACCTGTTTCAAGTGAAATTTCTGCTCAGAAAATAACTGAGGAAGTTGATAAAAATCAAAAACCTCTTCCTGTTTCTACTTTTGATGGTACTGATGAGAGTACTATACAGTCCAACTCCAATTTTAATAATCAGAGTGCATTTGAGATGGAAGGTAAATCACATGTGGCTTTGGAAGTTGCCTCTAATGCAAATGATTATGAAGAAAACCGGCTAAAGGTATCTGCTGAAAATTCAGGAACTGATGAGTGTGAAGGGAAAGCTGGATCTATTAGTGTTTAA 3795 42.79 MRSGDRSGGLVKSRNASGCLIIKKKGDGVSGAGSSGSQGLLESKKEKKRPRLVLSDSGSSDELLESRRPRVLSGSSQAGNGVTVFKQGVEERNFGCNGVVERKRSRLDVFEFDEYDRIEGKKQRKKEQMDNGEVGGRGFLGSKQVLQSSSRREFETGSSRQDIVYRRKHSYFGNTSGSLGERNRGTDYSETSSYDPQEAEGIRQVSRPVDSMKRNILIRPSSYSETKLHEKPGSFVGAEKKHPNLRKSLPTKKSKASYSGSEDRKEGKVKRGSGTEKQLLRERIRGMLVNAGWTIDYRPRRNRDYLDAVYINPTGTAYWSIIKAYDALQKQIDDEESKSKPKDADDIKHEEKLSSFIKQNGKKIGRCTLLVRNSGKGLNLETDGFVPYTGKRTLLSWLIDSGTVQLSEKVQYMNRRRTKVMLEGWITRDGIHCRCCSKILTVSKFEIHAGSKLRQPFQNIVLDSGVSLLQCQVDAWNRQEESERSGFHPIDVDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLNIQMLPSGDWHCPNCTCKFCGMADGSNAEDDTTVSELVTCSLCEKKYHTSCIQGVDAVLSDTNNPSTSFCGQGCRELFEHLQKFIGVKQELEAGFSWSLIHRTDPGSDTSVRGFPQRVESNSKLAIALTVMDECFLSIVDRRSEINLIHNVLYNRGSNFNRLNYSGFYTAILERGDEIICAASIRIHGTQLAEMPFIGTRHIYRRQGMCRRLFCAIESALCSLKVEMLIIPAISELMHTWTVGFGFNPLEESHKQELRSLNMLVFPGTDMLQKLLLEQETADGNMTASPGTKSVESKGNNCNTPDLENKSDIDSSNGHDLSIHNHSISQHSNDRNDNVCASDSISLTPAVPLTNPSIMSGASDALHEPEIQGSGEETRCSNSESGDKLNEATEAKCPSPSYASCNVLEIEKHVFDSPGEGDMHSPSEDKVGDARDPNVQVPGEGTICSSSQSRNKLGKPGSDFNCLSASEASHNGKAMVDSPVESNSRPSDECEDGNGLEVNAEAPGEGTICSNSQPSYKLPVSTTGMDFLPASEVSHGILEVEKLVSDSLVEGNVLSCAEGEAGDAHEVNTQVSGNGITGSNSCFKDKVAEPPSDVKPLSPSDESFNIEFKKPVLASPVEVNIQSSTKGEVDDAHEVGDSVASVEPVSSEISAQKITEEVDKNQKPLPVSTFDGTDESTIQSNSNFNNQSAFEMEGKSHVALEVASNANDYEENRLKVSAENSGTDECEGKAGSISV* 1265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5188838 5200736 + Vvi5g496 Vvi5g496 786638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g496 1264 ProSitePatterns Zinc finger PHD-type signature. 502 541 IPR019786 -
Vvi5g496 1264 SUPERFAMILY FYVE/PHD zinc finger 492 547 IPR011011 -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 1195 1219 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 894 924 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 257 277 - -
Vvi5g496 1264 SMART PHD_3 543 601 IPR001965 -
Vvi5g496 1264 SMART PHD_3 501 542 IPR001965 -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 41 68 - -
Vvi5g496 1264 PANTHER PHD FINGER FAMILY PROTEIN 260 345 - -
Vvi5g496 1264 PANTHER PHD FINGER FAMILY PROTEIN 357 1193 - -
Vvi5g496 1264 PANTHER PHD FINGER FAMILY PROTEIN 1 195 - -
Vvi5g496 1264 CDD PHD2_CHD_II 502 541 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 845 865 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 968 984 - -
Vvi5g496 1264 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 688 779 IPR016181 -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 809 865 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 220 277 - -
Vvi5g496 1264 Pfam Tify domain binding domain 424 474 IPR032308 -
Vvi5g496 1264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 491 561 IPR013083 -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 941 1023 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 174 199 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 1152 1219 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 809 836 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 1245 1264 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 24 79 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 941 960 - -
Vvi5g496 1264 MobiDBLite consensus disorder prediction 174 203 - -
Vvi5g496 1264 Pfam PHD-finger 502 544 IPR019787 -
Vvi5g496 1264 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 357 1193 - -
Vvi5g496 1264 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 195 - -
Vvi5g496 1264 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 260 345 - -
Vvi5g496 1264 ProSiteProfiles Zinc finger PHD-type profile. 499 544 IPR019787 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g496 Vvi7g89 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14852 PF16135 TDBD 4.40E-21 No_clan Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g496 - - vvi:100247619 2375.51