Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g608 ATGTGCGCCGCAGAGGACTCGTTACACACGAGAAATACAGAGGCAAAAAACTCGGGGCTGCAAGTGCGTAGGTTAGATGGAGGAACCCCAGCAGCGCACGCTAACGCGAAGATCCCCCCCTGTTTTGGGGTTTGGATGATGTCGGGCCCGGTGGCCAAGGTTCCCCGGGAGAGGCTCGCCGCATGCATGACATGTCGTATCTGCAACAAGCTCTTCGATGACGCCACCACCATATCTGAATGTCTCCACACCTTTTGCAGGAAGTGCATATTTGACAAGATAACAGAAGATGAGTTGGATTATTGTCCTGTATGCAATACAAATCTAGGCTGTGCTCCACTTGAGAAACTAAGGCCAGACCACAATTTGCAAGATTTAACAGCCAAAATCTTCCCTTCAGAAAAATCAAAGGTCGTTGCAACTGAAGAAGTGGCCTCAGTTCCATTGCCAGCTAGAAGAAAGGAGAGATCTCTGTCCTCATTAGGGGTTAGCACACCTAGAGTGTCATCCCAGACTGTTATGACAGGAAAAAGAACAAAATCTGCTGCAAGAAGGCTTTCTGCTGCACGAGAATCCACTTTTCCTGTTGAGGAGCCCATTAAGAAAGAGGAGGATTATCCAGAGAACCCGAGCTCACCTGAAATTCTAAATAAGAGAGCACAAAATAAAAAGAATCTAAAGGAGAATTATTCTAGTGCTGAGTCATCTAAGCAACACATTAATAAAGGTAAGGAGGAAAATTCTGAAACACTGAAAGAAAAAGATGATATGTGGAAACCCTTAAATTGCCTGGTGGAAGCTTGTAGTGGAACAAAGTCTAATAAGTTAAATTTGCAAGGTTCTTTGGCCAAATCAACACCTTCACATGTTGATGACAAAGAAGCGCATGTCCCTAAAGCAAAACTTAAAGAACGTGGCAAGTTAAAATTTCAGGATGAAGAAAATGGCACAACTCATGTGCCATCTGGTTCAGTGAAACCGAGAATCCGTGGTGGTCGACAAAAAAAGGCAGCTACTCCAGAGGGGTTTAGTATTCCAGCACTAGCTGAGAATGATGGAAACAGCAAATGTAATATAAGGGCTTGTCCAGTTTGGTTCTCATTAGTTGCTTCTGATAACCAGGAAGGTGATGCACCCTTGCCACAGATACCTTCAAGCTACTTGAGGATGAGGGATGGTCATTTGCCTGTTTCATTTCTCCAGAAGTACCTTGTCCAAAAACTGCATCTTAATAGTGAATCTGAGGTGGAGATCACACTGCGGGGTCAGCCGGTTGTTCCCACATTGCAGCTGCAGAGCTTAGTAGATTTGTGGTTCCAAGCAGCAGCACCAACAACATCAGAAGCAACACAGCCACCCATTGGCAGCTCAGCCAAGGAGTTTGTGATGGTGCTGTCATATGGTCGCAAACCTAAGACCCCATAA 1425 45.19 MCAAEDSLHTRNTEAKNSGLQVRRLDGGTPAAHANAKIPPCFGVWMMSGPVAKVPRERLAACMTCRICNKLFDDATTISECLHTFCRKCIFDKITEDELDYCPVCNTNLGCAPLEKLRPDHNLQDLTAKIFPSEKSKVVATEEVASVPLPARRKERSLSSLGVSTPRVSSQTVMTGKRTKSAARRLSAARESTFPVEEPIKKEEDYPENPSSPEILNKRAQNKKNLKENYSSAESSKQHINKGKEENSETLKEKDDMWKPLNCLVEACSGTKSNKLNLQGSLAKSTPSHVDDKEAHVPKAKLKERGKLKFQDEENGTTHVPSGSVKPRIRGGRQKKAATPEGFSIPALAENDGNSKCNIRACPVWFSLVASDNQEGDAPLPQIPSSYLRMRDGHLPVSFLQKYLVQKLHLNSESEVEITLRGQPVVPTLQLQSLVDLWFQAAAPTTSEATQPPIGSSAKEFVMVLSYGRKPKTP* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6592178 6599657 + Vvi5g608 Vvi5g608 786750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g608 474 ProSiteProfiles Zinc finger RING-type profile. 65 106 IPR001841 -
Vvi5g608 474 SUPERFAMILY RING/U-box 61 131 - -
Vvi5g608 474 MobiDBLite consensus disorder prediction 311 338 - -
Vvi5g608 474 MobiDBLite consensus disorder prediction 158 178 - -
Vvi5g608 474 MobiDBLite consensus disorder prediction 195 209 - -
Vvi5g608 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 155 IPR013083 -
Vvi5g608 474 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 47 471 IPR044807 GO:0004842
Vvi5g608 474 ProSitePatterns Zinc finger RING-type signature. 81 90 IPR017907 -
Vvi5g608 474 MobiDBLite consensus disorder prediction 155 253 - -
Vvi5g608 474 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 47 471 - -
Vvi5g608 474 MobiDBLite consensus disorder prediction 238 253 - -
Vvi5g608 474 SMART ring_2 65 105 IPR001841 -
Vvi5g608 474 Pfam Zinc finger, C3HC4 type (RING finger) 65 105 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g608 Vvi7g29 ECH
Vvi5g608 Vvi14g518 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g608 K16277 - vvi:100245936 853.203