Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1082 ATGGGCGTGGATCAAAATGTTGTTAAGCAGGAAGTGGAGGATGAAGTGTTCAGAATGGCGTCGTCTCGGGAGAGCCGAAGGTCCAGGGAAGAAGACGTGACTCTGGCTCAATTGTCCCAGACTGTGCGGACCTTCGCTCCCTCCACGCCGCAGTCACTAACAAAGATCAAGCTCAAGTCTTCTACTCGGACTAAACAGAAAAAGTGTGTAGAGAAAAAAGAGAAGGGTTTTGGGATCAAGAGGAGGCGTTCGACTTTCAAATTGAAGCACGAGGCATCTGATCATTCACCAAAGTCTGCAAGCCGTAAACGAAATAAGGCTGCAGTTGATGGCTCATGTACTCCTCTTAAAGCTAAGACATCTGCTCTGATTCGAGCAGAGGAGGTTCAGTCAAATCTGGGCCCTGAATTCCCTAGCTTTGTGAAAGTTTTGGTCAGATCACATGTGTCTAGTTGTTTTTGGATGGGGCTTCCTGGGCCATTCTGTGATATGCACCTACCAAAAAAGGATGTTATCATTACTTTGGAAGATGAAAGTGGGGCAGCATGTCAGATTAAATATATCGCAGACAAGACGGGACTAAGTGCTGGGTGGAGACGGTTTTCCATGGATCACAAGTTGCTTGAGGGAGATGTTTTGGTCTTCCATTTAGTTGAGCCAACCTCATTTAAGGTGTATATAATAAGGGCTAATGATTTGACTGAAGTCGATGGTGCTCTTGGCCTTCTAGAACTGGACACTCATACAAAAAATGATGCTGGCAAGCTGGTTGCAGTCTCTGTAATTGCAGATCTGGATACAGTTGCTTGTAAAAGTTCAAAGAGGAAGCATTCAAAATCTCTTCCACTGGTTGTTTTCCAAAAGAAGAATAGGAAGACAGGATCAATTCCTAACCTTATGCAGAGAGAACAATCTGAAAATGACAGTGAAGGGAATGGTTCAGAAGTTTTGGAAGGTTCCAAATTCTTTGAGCCTGCAGTTCAATTCAAAGACATAAGTTTTGATAATTTCAACATTTTGGTGGATGGGCTGCTTATTGATTCTGAGCTCCCAGAAGATACTAGAGCGAAGTACTATGAGCTTTGCTGCAGTCAGAATGCATTTCTTCATGAGAAAATTGTCGAGGGCTTAAATTGTAGGTTGATTGCTGAAATTATTTCTCAGACAGTTCAGATTGCTGATGCCCTGAGAGCTTGCAAGCTTACTACTTCTCGGGTTGAGTTTACAAATTGGGAGAGGACTTTGAAAGCCTTTGAGGTTCTGGGCATGAACGTTGGATTTTTACAAGCTCGACTGGACCATCTTGTGAGCCTTGCCTTTGACTCAGAAGGTGCCATGTACTCGAGGCAGTACATGGAGGTCACAATCGAACGAGCTCATGCAGAAGATGAGATGAGAGATCTCGAAGATAAGCTTATGGAACTAAAAGCAGCATCTGAAAGGATGGATGCTGATATAGAGACTCTGAAGGAAGCAGTTGAGAACCATGTAATCAGGTTCCAAGAAGAGATTGTCGCACCCTGGTAA 1527 43.81 MGVDQNVVKQEVEDEVFRMASSRESRRSREEDVTLAQLSQTVRTFAPSTPQSLTKIKLKSSTRTKQKKCVEKKEKGFGIKRRRSTFKLKHEASDHSPKSASRKRNKAAVDGSCTPLKAKTSALIRAEEVQSNLGPEFPSFVKVLVRSHVSSCFWMGLPGPFCDMHLPKKDVIITLEDESGAACQIKYIADKTGLSAGWRRFSMDHKLLEGDVLVFHLVEPTSFKVYIIRANDLTEVDGALGLLELDTHTKNDAGKLVAVSVIADLDTVACKSSKRKHSKSLPLVVFQKKNRKTGSIPNLMQREQSENDSEGNGSEVLEGSKFFEPAVQFKDISFDNFNILVDGLLIDSELPEDTRAKYYELCCSQNAFLHEKIVEGLNCRLIAEIISQTVQIADALRACKLTTSRVEFTNWERTLKAFEVLGMNVGFLQARLDHLVSLAFDSEGAMYSRQYMEVTIERAHAEDEMRDLEDKLMELKAASERMDADIETLKEAVENHVIRFQEEIVAPW* 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16919584 16924427 - Vvi7g1082 Vvi7g1082 789948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1082 508 SMART B3_2 140 231 IPR003340 GO:0003677
Vvi7g1082 508 MobiDBLite consensus disorder prediction 87 105 - -
Vvi7g1082 508 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Vvi7g1082 508 MobiDBLite consensus disorder prediction 296 314 - -
Vvi7g1082 508 Gene3D - 117 234 IPR015300 -
Vvi7g1082 508 MobiDBLite consensus disorder prediction 296 315 - -
Vvi7g1082 508 SUPERFAMILY DNA-binding pseudobarrel domain 134 231 IPR015300 -
Vvi7g1082 508 MobiDBLite consensus disorder prediction 86 110 - -
Vvi7g1082 508 Coils Coil 451 495 - -
Vvi7g1082 508 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 445 IPR044837 -
Vvi7g1082 508 Pfam B3 DNA binding domain 140 230 IPR003340 GO:0003677
Vvi7g1082 508 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 4 445 - -
Vvi7g1082 508 CDD B3_DNA 138 229 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g432 Vvi7g1082 ECH
Vvi3g431 Vvi7g1082 ECH
Vvi7g1082 Vvi18g781 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14991 PF02362 B3 2.10E-16 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1082 - - vvi:100264623 983.4