Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g354 ATGAATGTCGAAACTGGAGAAGGTTCCATGTCTGTAACTGCTGCAGTTCCTCTCCAGTTCCCAGAAGGTATCAGAGTTCTTGCAGTTGATGATGATCAGACTTGTCTTCAAATAATGGGAAGAATGCTTGAGCGTTGCATGTATAAAGTTACCAAATGTAGGAATGCGGAGGAGGCACTGTCCCTGCTAAGGGAAGATAGCAGTAGGTTTGATATTGTTCTAAGTGATTTGCATATGCCTGATATTAGTGGACTTAAGCTTCTTGAGATCATTGGATTGGAGATGGACATGCCTGTTGTTATGATGTCTTCGGATGAGAAAAGGGAAACTATCATGAAGGGTATCATTCATGGTGCCTGTGACTATTGGGTTAAACCGGTTAGGATGGATGCAATTCAGCTGGTATGGCAGCATGTGATTCGGAAAAGAAGGAATGGATTGAAGGAAATGGAGCATGCAATGGAGGATGATGTAGAGGGTGGGAATGAAGAGGGCAGTAGAAGCATGAAGAGGAAAAAAGATAGGGAGGATGAAGGAGAATCCAGGAATGCTATGCCAACAACGGTAAAGAAGCCTAGGATGGTTTGGACACCAGCCCTCCATCAACAGTTTGTGGCAGCTGTGAATCAACTGGGCTATTCTAAGGCAGTTCCAAAGAAAATCCTAGAGCAAATGAATCTTCCTGGTCTTACTAGAGAAAATGTTGCCAGCCACCTTCAGGTAATGGAAAAAATTTTCTCCAGAAAGATTTATTGTTATTGTTTGGTAAAAGACACTGATAATTACAGCTATATGGTGCAGAAATTTCGCCTTTATCTCAGCAGGGTAAGTGAGATTTCACAGGGTCCCGAAAAGACATATATGAATCCAGCTTCTTTAAATGGCTGCAACCCCCAACTTAATGTGGTTGGTGAAGTCCCACTGCAAGGTCTCACCAGGGAAGGAACCTCTAGGACTCCCATGGCTTTTGTAGATCAAAGGAACCTTTTCCACTATGGAGTGGGGCAACAAGCTTGCAATAGCAGTAAACAAGCGAAGTTGCTTCATGAAGTTCCAGCCAATATGCTGCAGCAACCTGCTCAAATGTATAGGAGCCTGGATTTTCAAGTTAGTGAAGGAACTCCAAGATCTCTAAACTTACCAGCTGCTAATGACGATAGTGTTTATGGAAGCCAGAGTAGCTTTTCTACGATGCAGATGGCTCAAACCCCATATGGCATGCCAATGCTGAATGAAATTTCAGGTCATCAGCATTTTGGGCATCACCCTTTGTCCAATCAAATTCTTTCTAATGATATTGAAGCCCAGGCTCTGAGGACAGTTGGGAATCCCATAGAAAGTAATGCTGCAGCATGCTATCCTCTAGCTTCTCCAATGGTTGATTTTTCAAAAGACCATAGCCATGGCTTCCATCTTGAGATGAATGCTATCTATGGAAATGCTTCTTCTGTTGGCCAGGGAATGGTCTCCCTTGGTGAAGAATATGGATATAGGAACCCGGAAAATATTGCTCAACCTGGAAACAACCTCTTGGTTGATGATTCTTTTAGGATGAAGCCTGAAAGTATGCCTAGGCCGGGCTGTAAGTCTTTATCTTTTGGCCAACACTTTGACCACGGATTCATGTCCTGA 1632 43.26 MNVETGEGSMSVTAAVPLQFPEGIRVLAVDDDQTCLQIMGRMLERCMYKVTKCRNAEEALSLLREDSSRFDIVLSDLHMPDISGLKLLEIIGLEMDMPVVMMSSDEKRETIMKGIIHGACDYWVKPVRMDAIQLVWQHVIRKRRNGLKEMEHAMEDDVEGGNEEGSRSMKRKKDREDEGESRNAMPTTVKKPRMVWTPALHQQFVAAVNQLGYSKAVPKKILEQMNLPGLTRENVASHLQVMEKIFSRKIYCYCLVKDTDNYSYMVQKFRLYLSRVSEISQGPEKTYMNPASLNGCNPQLNVVGEVPLQGLTREGTSRTPMAFVDQRNLFHYGVGQQACNSSKQAKLLHEVPANMLQQPAQMYRSLDFQVSEGTPRSLNLPAANDDSVYGSQSSFSTMQMAQTPYGMPMLNEISGHQHFGHHPLSNQILSNDIEAQALRTVGNPIESNAAACYPLASPMVDFSKDHSHGFHLEMNAIYGNASSVGQGMVSLGEEYGYRNPENIAQPGNNLLVDDSFRMKPESMPRPGCKSLSFGQHFDHGFMS* 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3581268 3584264 + Vvi7g354 Vvi7g354 789220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g354 543 Gene3D - 187 248 - -
Vvi7g354 543 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 191 242 IPR006447 GO:0003677
Vvi7g354 543 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Vvi7g354 543 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 250 IPR017930 -
Vvi7g354 543 Gene3D - 23 157 - -
Vvi7g354 543 Pfam Myb-like DNA-binding domain 193 240 IPR001005 -
Vvi7g354 543 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR1-LIKE ISOFORM X1 10 543 - -
Vvi7g354 543 MobiDBLite consensus disorder prediction 152 186 - -
Vvi7g354 543 Pfam Response regulator receiver domain 26 132 IPR001789 GO:0000160
Vvi7g354 543 SUPERFAMILY CheY-like 22 144 IPR011006 -
Vvi7g354 543 SUPERFAMILY Homeodomain-like 188 242 IPR009057 -
Vvi7g354 543 MobiDBLite consensus disorder prediction 152 184 - -
Vvi7g354 543 CDD REC_typeB_ARR-like 26 140 - -
Vvi7g354 543 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 543 IPR045279 GO:0009736
Vvi7g354 543 SMART REC_2 24 136 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g350 Vvi7g354 ECH
Vvi5g113 Vvi7g354 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15025 PF00072 Response_reg 2.30E-20 CL0304 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g354 - K14491 ming:122082399 375.555