Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g439 ATGGTGGGTCTTGATGCTGCTGGTAAGACTACCATTCTGTACAAGCTCAAGCTGGGAGAGATAGTCACCACCATTCCTACTATTGGATTTAATGTGGAGACTGTGGAATATAAGAACATTAGCTTTACTGTTTGGGATGTGGGTGGCCAGGACAAGATCCGACCTTTGTGGAGACATTATTTCCAAAACACTCAGGGTCTGATCTTTGTGGTTGATAGCAATGACCGTGATCGTGTTGTTGAAGCTAGGGATGAGCTGCACAGGATGTTGAATGAGGACGAGTTGAGGGATGCCGTGCTGCTAGTATTTGCTAACAAACAAGATCTTCCAAATGCGATGAATGCTGCTGAGATCACTGACAAGCTTGGCCTTCACTCTCTCCGCCAACGCCATTGGTACATCCAGAGCACATGTGCCACATCCGGTGAAGGGCTGTATGAGGGATTGGACTGGCTCTCCAACAATATTGCAAACAAGGCATAA 483 46.79 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4454808 4456525 - Vvi7g439 Vvi7g439 789305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g439 160 PRINTS GTP-binding SAR1 protein signature 26 50 IPR006689 GO:0003924|GO:0005525
Vvi7g439 160 PRINTS GTP-binding SAR1 protein signature 53 78 IPR006689 GO:0003924|GO:0005525
Vvi7g439 160 PRINTS GTP-binding SAR1 protein signature 98 119 IPR006689 GO:0003924|GO:0005525
Vvi7g439 160 SMART sar_sub_1 1 156 IPR006689 GO:0003924|GO:0005525
Vvi7g439 160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 158 IPR027417 -
Vvi7g439 160 TIGRFAM small_GTP: small GTP-binding protein domain 1 137 IPR005225 GO:0005525
Vvi7g439 160 CDD Arf1_5_like 1 155 IPR045872 GO:0003924
Vvi7g439 160 Pfam ADP-ribosylation factor family 1 156 IPR006689 GO:0003924|GO:0005525
Vvi7g439 160 SMART arf_sub_2 1 160 - -
Vvi7g439 160 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 160 IPR024156 GO:0005525
Vvi7g439 160 PANTHER ADP-RIBOSYLATION FACTOR 2-LIKE 1 160 - -
Vvi7g439 160 Gene3D - 1 160 IPR027417 -
Vvi7g439 160 ProSiteProfiles small GTPase Arf family profile. 1 156 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g231 Vvi7g439 ECH
Vvi7g439 Vvi14g59 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g439 K07937 - nnu:104611227 327.405