Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g896 ATGGCTTTGTTCAACCTCTCTTCCTCCTCAATTGCCCCTACTCGTTCACTACGCTACAATGGTGTGAACCCATTTGCAGAGCATGGGTACCTATTATCAGGCTCTGTGTGGTCTTCTATCAATAGACAATCGTGCTTGAGTTTAAAGGCCAATGGTAGAGGGATAGCTGCATTGGTATCTGGAAATGATGGTCTCTTATCTTATTCTAGCAGCAGTGGAATGGTAGAAGAGGATGCTTTTTTCAATGAACAGGCAGACCAACCAGAAGGGACCTCTTTTGGGACCCTTGCCGCAGAGATAACTTCTACTACTAGTGAGTTTTTTTATAATAATGATGAATTAGACCTGGATTGTCCTACCGAGGGGTTTTCTTCAGTCGCTGAGGCCATTGAGGACATCCGCCAAGGCAAGTTTGTAATTGTTGTGGATGATGAAGACAGAGAAAATGAGGGAGATTTAATAATGGCGGGATCATTGGTTACTCCTCATGCTATGGCCTTTATTGTCAAGCATGGGACCGGGATAGTGTGTGTGAGCATGAAAGGGGAAGACTTAGAGAGGCTGCAACTTCCTTTGATGGTGACTCAGAAGGAGAATGAAGAGAAACTTTGTACAGCTTTCACTGTGTCAGTGGATGCAAAGCATGGGACGACAACTGGTGTTTCAGCTCATGATAGAGCAACAACAATATTAGCTCTTGCATCTAAAGATTCAAAACCCCAGGATTTCAATCGTCCAGGTCATATTTTTCCCCTCAAGTGCAGGGAGGGAGGGGTTTTAAAAAGAGCTGGGCATACTGAAGCTTCAGTTGATCTTGCTGTGTTGGCTGGGTTAGAGCCTGTTGCAGTTTTATGTGAAATTGTGGATGATGATGGCTCCATGGCCAGGTTGCCAAAGCTTCGCCAATTTGCAGAGGTGGAGAACTTGAAGATTATTTCAATCGCTGATTTAATCAGATATAGGAGGAAACGAGATAAATTAGTGGAGAAGGCTGCTGGTGCACCAATACCCACTATGTGGGGGCCATTTAAGGCCTACTGTTACAAATCAATGCTGGATGGGGTCGAGCATATTGCCATGGTTAAGGGTAAGATAGGGAATGGACAAGATATTCTTGTGAGGGTACATTCTGAGTGCCTCACTGGTGACATATTTGGGTCAGGCAGATGTGACTGTGGAAACCAGCTAGCACTTGCAATGCAGCAAATCGAAGCTGAGGGTAGAGGTGTCTTGGTGTATCTCCGTGGACATGAGGGAAGGGGAATTGGTTTGGGACACAAGCTCCGTGCTTACAACCTACAGGATGATGGACGTGACACAGTCGAAGCCAATGAGGAGCTGGGATTGCCCGTTGATTCTCGGGAGTATGGCATAGGAGCACAGATACTTCGAGATCTCGGTGTTCATACAATGAAGCTGATGACAAACAACCCTGCAAAATACCATGGACTTAAAGGATATGGTTTGGCCATTGTAGGCAGGGTTCCATTGTTGGCACCCATAACCATGGAGAATAGAAGGTATTTGGAGACTAAACGTGAAAAAATGGGGCATATCGGTCTGGACATCGCTGGCCATGTTAATGGGAGTTATCAACAAAAATAG 1605 45.36 MALFNLSSSSIAPTRSLRYNGVNPFAEHGYLLSGSVWSSINRQSCLSLKANGRGIAALVSGNDGLLSYSSSSGMVEEDAFFNEQADQPEGTSFGTLAAEITSTTSEFFYNNDELDLDCPTEGFSSVAEAIEDIRQGKFVIVVDDEDRENEGDLIMAGSLVTPHAMAFIVKHGTGIVCVSMKGEDLERLQLPLMVTQKENEEKLCTAFTVSVDAKHGTTTGVSAHDRATTILALASKDSKPQDFNRPGHIFPLKCREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAEVENLKIISIADLIRYRRKRDKLVEKAAGAPIPTMWGPFKAYCYKSMLDGVEHIAMVKGKIGNGQDILVRVHSECLTGDIFGSGRCDCGNQLALAMQQIEAEGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVHTMKLMTNNPAKYHGLKGYGLAIVGRVPLLAPITMENRRYLETKREKMGHIGLDIAGHVNGSYQQK* 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14964454 14981951 + Vvi7g896 Vvi7g896 789762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g896 534 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 122 518 IPR016299 GO:0009231
Vvi7g896 534 CDD GTP_cyclohydro2 327 519 IPR000926 GO:0003935|GO:0009231
Vvi7g896 534 Hamap GTP cyclohydrolase-2 [ribA]. 326 522 IPR000926 GO:0003935|GO:0009231
Vvi7g896 534 Gene3D GTP cyclohydrolase II 328 499 IPR036144 -
Vvi7g896 534 PANTHER BIFUNCTIONAL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA 1, CHLOROPLASTIC-LIKE ISOFORM X1 1 530 - -
Vvi7g896 534 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 128 320 IPR000422 GO:0008686|GO:0009231
Vvi7g896 534 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 123 321 IPR000422 GO:0008686|GO:0009231
Vvi7g896 534 Gene3D DHBP synthase 114 327 - -
Vvi7g896 534 TIGRFAM ribA: GTP cyclohydrolase II 331 519 IPR000926 GO:0003935|GO:0009231
Vvi7g896 534 PANTHER GTP CYCLOHYDROLASE II-RELATED 1 530 - -
Vvi7g896 534 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 121 325 IPR000422 GO:0008686|GO:0009231
Vvi7g896 534 SUPERFAMILY YrdC/RibB 122 324 IPR017945 -
Vvi7g896 534 Pfam GTP cyclohydrolase II 333 496 IPR032677 -
Vvi7g896 534 SUPERFAMILY RibA-like 326 498 IPR036144 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g978 Vvi7g896 ECH
Vvi3g969 Vvi7g896 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g896 K14652 - vvi:100241208 1065.83