Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g483 ATGTCCAGGAAGACAGCAACACACACCACTGAGAGTGATCGCAAGCATTGCAATTGTAAGAGGACCCAATGCTTGAAACTTTACTGTGACTGCCTTGCAGCAGGAGTGTATTGTACAGATTCTTGTGCATGCTCTAACTGCTTGAACAAGTCTGAAAATGAAGGCGTGGTACAAATCATTCGAGAGAAAATCGAATCCCGTGATCCACTTGCATTTGCTCCAAGGATTGTAAACCCTGACACTGACACTACTGACAATGTCCTGCAGGAAGATGGGAACTGGACGACCCCATCATCAGCCAGGCATAAGAGAGGATGCAATTGCAAGAAGTCAATGTGTCAGAAAAAATATTGTGAATGCTATCAGGTTTATATTTCTGTTGATTTAAATAGAAGGGCTGAAAGATGGGGAGTTCAAAGTCATGGGGAGCTGAACATGGGGGGAGCAGATCAATTCTCCCCAGAATGGGAAGGAATTACTGATATCAACCAAATTACTCCATTGTCTCATCCTCACTCAGGGGCAGGGGCTTCCTCAGCTTCACCCAATCCAAGAGACTTCCCTGAAGTTCTGCATGCTGAATTATATCGAGGAAATAACAGTCAGACATCAGCTGGTGCCCTTCATTGGAGCAGTTCATCCAACACTCTTGTGCCTCTGCGACATGGGAATGAGGCCCCACAAGAACTCAGTTCTGACAGTGCGCAACATGCCTTGACAAAGGATGATGATACACCAAAGATACTCAGCTCTTCCCCCAACGGACCAATGCAAGCTTGCTCATCAAATCAGAAGTGCGTGTCTCCTCCACAAATTCAATTGAAGGATACGAGTTTAAGACCTTCACCAAGCTTGACAAATGAACAGACAATCATAAGGCTGGGTACACCTTCTGTCCGTCCTTTTAGCTGGTGTAGTAATTCTAAAGATGGTATTCCTCAAATCAAAAGTCATCCCAATGACAGCACCAGCAATCAGTGA 981 45.06 MSRKTATHTTESDRKHCNCKRTQCLKLYCDCLAAGVYCTDSCACSNCLNKSENEGVVQIIREKIESRDPLAFAPRIVNPDTDTTDNVLQEDGNWTTPSSARHKRGCNCKKSMCQKKYCECYQVYISVDLNRRAERWGVQSHGELNMGGADQFSPEWEGITDINQITPLSHPHSGAGASSASPNPRDFPEVLHAELYRGNNSQTSAGALHWSSSSNTLVPLRHGNEAPQELSSDSAQHALTKDDDTPKILSSSPNGPMQACSSNQKCVSPPQIQLKDTSLRPSPSLTNEQTIIRLGTPSVRPFSWCSNSKDGIPQIKSHPNDSTSNQ* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5833089 5835552 - Vvi9g483 Vvi9g483 792194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g483 326 MobiDBLite consensus disorder prediction 242 287 - -
Vvi9g483 326 MobiDBLite consensus disorder prediction 167 187 - -
Vvi9g483 326 SMART CXC_2 12 53 IPR033467 -
Vvi9g483 326 SMART CXC_2 101 131 IPR033467 -
Vvi9g483 326 ProSiteProfiles CRC domain profile. 13 143 IPR005172 -
Vvi9g483 326 MobiDBLite consensus disorder prediction 245 287 - -
Vvi9g483 326 MobiDBLite consensus disorder prediction 216 235 - -
Vvi9g483 326 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 3 314 - -
Vvi9g483 326 MobiDBLite consensus disorder prediction 305 326 - -
Vvi9g483 326 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 15 50 IPR005172 -
Vvi9g483 326 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 103 122 IPR005172 -
Vvi9g483 326 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 314 IPR044522 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g451 Vvi9g483 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15236 PF03638 TCR 1.50E-11 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g483 K21776 - vvi:100855293 629.017