Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g64 ATGCAGCAAGCTCTTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAGATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGGAACATTCATACGCAGGTATCGGAACCACTTCTTCAAGAGGTTTTTGCAAGTACTGGTCCTGTTGAAGGCTGCAAGCTCGTTAGAAAGGAAAAGTCATCCTATGGATTCATCCACTACTTTGATCGCAGATCTGCTGCATTGGCTATATTGTCTCTAAACGGAAGGCATCTGTTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCTAGTGGTCAAAGGGAGGACACATCAGGTCACTTCAACATTTTTGTTGGTGATCTCAGCCCTGAGGTTACTGATGCTACATTGTTTGCATGCTTTTCTGTTTTTCCCAGTTGTTCAGATGCGAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGGTTTGGATTTGTTTCTTTCCGCAATCAACAGGACGCCCAAAGTGCTATCAATGACATAACCGGAAAGTGGCTTGGGAGTCGACAGATACGTTGTAACTGGGCAACTAAAGGTGCTGGTTCCAATGATGATAAACAAAGTTCAGATGCCAAGAGTGTGGTAGAGCTGACCAATGGTTCATCAGAAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTAATTGAGGAAGTTCGGGTTCAACGAGATAAGGGCTTTGGTTTTGTTAGATACAATACTCATGCTGAGGCTGCTCTGGCTATTCAGATGGGAAATACCCAGTCAATTCTGTGTGGCAAACCAATCAAGTGCTCATGGGGTAGCAAGCCAACTCCACCAGGAACAAGTTCAAACCCACTCCCCCCACCTGCAGCTGCACCTCTGCCAGGTCTTTCAGCCACGGACCTCCTAGCTTATGAGCGGCAACTAGCAATGAGCAAGATGGGCCATGCACTGATGCACCCTCAGGGGCAGCATCCTCTTAAGCAGGCAGCAATGGGAATGGGGGCCGCTGGAGCAAGCCAGGCAATATATGATGGCGGCTTCCAGAACGTTGCTGCTGCTCAGCAGCTCATGTATTACCAGTAA 1224 48.2 MQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDSSTCRSVYVGNIHTQVSEPLLQEVFASTGPVEGCKLVRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVFPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDITGKWLGSRQIRCNWATKGAGSNDDKQSSDAKSVVELTNGSSEDGKETATNEAPDNNPQYTTVYVGNLAPEVTQLDLHRHFHTFGAGVIEEVRVQRDKGFGFVRYNTHAEAALAIQMGNTQSILCGKPIKCSWGSKPTPPGTSSNPLPPPAAAPLPGLSATDLLAYERQLAMSKMGHALMHPQGQHPLKQAAMGMGAAGASQAIYDGGFQNVAAAQQLMYYQ* 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 621137 627644 - Vvi9g64 Vvi9g64 791775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g64 407 Gene3D - 34 119 IPR012677 -
Vvi9g64 407 Gene3D - 219 326 IPR012677 -
Vvi9g64 407 Gene3D - 120 217 IPR012677 -
Vvi9g64 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 114 IPR000504 GO:0003723
Vvi9g64 407 SUPERFAMILY RNA-binding domain, RBD 39 204 IPR035979 GO:0003676
Vvi9g64 407 MobiDBLite consensus disorder prediction 202 245 - -
Vvi9g64 407 CDD RRM2_PUB1 126 200 - -
Vvi9g64 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 321 IPR000504 GO:0003723
Vvi9g64 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 248 312 IPR000504 GO:0003723
Vvi9g64 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 108 IPR000504 GO:0003723
Vvi9g64 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 197 IPR000504 GO:0003723
Vvi9g64 407 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 1 407 - -
Vvi9g64 407 SMART rrm1_1 247 317 IPR000504 GO:0003723
Vvi9g64 407 SMART rrm1_1 41 110 IPR000504 GO:0003723
Vvi9g64 407 SMART rrm1_1 126 199 IPR000504 GO:0003723
Vvi9g64 407 CDD RRM3_TIA1_like 246 321 - -
Vvi9g64 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 203 IPR000504 GO:0003723
Vvi9g64 407 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 407 - -
Vvi9g64 407 CDD RRM1_TIA1_like 42 112 - -
Vvi9g64 407 SUPERFAMILY RNA-binding domain, RBD 239 328 IPR035979 GO:0003676
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi9g64 Vvi11g45 ECH
Vvi4g247 Vvi9g64 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g64 K13201 - vvi:100260069 803.897