Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g111 . . . . . . . . . Cmo18g00524 . Cma18g00546 . . . Cpe09g00693 . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00889 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g112 . . . . . . . . . Cmo18g00247 . . . . . Cpe09g00933 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g115 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g116 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g118 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g120 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 12 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
7 10399557 10400737 - Bda026029.1 Bda07g00889 889
18 3514491 3517015 - CmaCh18G005460.1 Cma18g00546 546
18 1621910 1626897 - CmoCh18G002470.1 Cmo18g00247 247
18 3822705 3825235 - CmoCh18G005240.1 Cmo18g00524 524
9 6137273 6139834 + Cp4.1LG09g06920.1 Cpe09g00693 693
9 8390455 8395524 + Cp4.1LG09g09330.1 Cpe09g00933 933
1 1086664 1093073 - Vvi1g111 Vvi1g111 111
1 1098378 1102698 - Vvi1g112 Vvi1g112 112
1 1107409 1111568 + Vvi1g113 Vvi1g113 113
1 1115321 1118841 + Vvi1g114 Vvi1g114 114
1 1121378 1125903 - Vvi1g115 Vvi1g115 115
1 1128472 1132261 - Vvi1g116 Vvi1g116 116
1 1143947 1147736 - Vvi1g117 Vvi1g117 117
1 1169465 1177451 - Vvi1g118 Vvi1g118 118
1 1187498 1191134 + Vvi1g119 Vvi1g119 119
1 1191518 1197413 + Vvi1g120 Vvi1g120 120
       

DecoBrowse