Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g104 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g105 . . . . . . . . . Cmo18g00245 . . . . . Cpe09g00935 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g106 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g109 . . . . . . . . . Cmo18g00568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00991 . . Cco01g1065 Clacu01g1023 Cmu01g0971 Cre01g0904 . . . .
Vvi1g110 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 11 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 14117424 14118378 - CcPI632755_01g010650.1 Cco01g1065 1065
1 13902292 13903203 - ClG42_01g0102300.10 Clacu01g1023 1023
1 14570454 14575241 - ClCG01G009960.1 Cla01g00991 991
18 1617126 1618337 + CmoCh18G002450.1 Cmo18g00245 245
18 4721073 4724409 - CmoCh18G005680.1 Cmo18g00568 568
1 13892945 13895564 - CmPI595203_01g009710.1 Cmu01g0971 971
9 8399822 8401132 - Cp4.1LG09g09370.1 Cpe09g00935 935
1 12548729 12549640 - CrPI670011_01g009040.1 Cre01g0904 904
1 1002539 1009582 - Vvi1g101 Vvi1g101 101
1 1017873 1019921 + Vvi1g102 Vvi1g102 102
1 1030307 1032374 + Vvi1g103 Vvi1g103 103
1 1049292 1049640 - Vvi1g104 Vvi1g104 104
1 1060700 1062011 + Vvi1g105 Vvi1g105 105
1 1063041 1070438 - Vvi1g106 Vvi1g106 106
1 1071685 1078368 - Vvi1g107 Vvi1g107 107
1 1079053 1081341 + Vvi1g108 Vvi1g108 108
1 1082206 1082935 + Vvi1g109 Vvi1g109 109
1 1082988 1085765 - Vvi1g110 Vvi1g110 110
       

DecoBrowse