Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g201 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g202 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g203 . . Bda01g02108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0489 Cone9ag0501 . . . . . . . . . . Bma01g00143 . . . . . Cma15g01425 . Car15g01287 Cpe13g00022 . . . . . . . . . . . . . . . . . . .
Vvi1g204 . . Bda01g02107 . . . . . Cmo04g01630 Cmo18g01087 . Cma18g01066 Car04g01609 Car18g00988 Sed06g1837 . Cpe01g01384 Bhi07g01401 Tan04g0930 Cmetu10g0942 Lac13g0432 Hepe10g1846 . . . . . . . . . Cone13ag0878 . . . Lsi04g00317 Csa05g02553 Chy10g01092 Cme10g00318 . . . . . Bpe02g02296 Bma01g00144 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g205 . . . . . . . . Cmo04g01629 Cmo18g01085 . . Car04g01608 Car18g00987 Sed06g1790 Cpe09g00234 Cpe01g01383 Bhi07g01400 Tan04g0929 Cmetu10g1131 Lac13g0434 . . . Cla05g02381 Cam05g2551 Cec05g2584 Cco05g2624 Clacu05g2553 Cmu05g2410 Cre05g2527 Cone13ag0877 Cone19ag0876 . . Lsi04g00315 Csa05g02555 Chy10g01094 Cme10g00317 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g206 . . . . . . . . . . . Cma18g01064 . . Sed06g1838 . . Bhi07g01399 Tan04g0928 Cmetu10g1556 Lac13g0435 Hepe10g1847 . . . . . . . . . . . . . Lsi04g00314 Csa05g02556 Chy10g01096 Cme10g00316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g207 . . . . . . Bma14g01684 . Cmo04g01627 Cmo18g01084 . . Car04g01606 . Sed07g1969 . Cpe01g01382 Bhi07g01398 Tan04g0927 Cmetu10g0461 Lac13g0436 Hepe10g1849 . . Cla05g02354 Cam05g2523 Cec05g2551 Cco05g2591 Clacu05g2518 Cmu05g2380 Cre05g2495 . . . . Lsi04g00312 Csa05g02557 Chy10g01097 Cme10g00314 . Blo11g00817 Bda07g01513 . Bpe11g01676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g208 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g209 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 21 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
1 57138538 57139566 - Bda004435.1 Bda01g02107 2107
1 57154906 57156737 + Bda004439.1 Bda01g02108 2108
7 28117455 28142198 + Bda028363.2 Bda07g01513 1513
7 41938979 41963309 - XM_039036229.1 Bhi07g01398 1398
7 42037298 42040469 - XM_039036944.1 Bhi07g01399 1399
7 42082570 42084993 - XM_039037122.1 Bhi07g01400 1400
7 42136348 42140561 - XM_039036673.1 Bhi07g01401 1401
11 13441941 13460678 + BLOR03693 Blo11g00817 817
1 1372304 1374291 - Bma000309.1 Bma01g00143 143
1 1378001 1379053 + Bma000310.1 Bma01g00144 144
14 35833401 35856437 + Bma012427.1 Bma14g01684 1684
2 23687284 23688321 - Bpe010113.1 Bpe02g02296 2296
11 12998680 13018075 + Bpe004989.1 Bpe11g01676 1676
5 33088971 33091433 - CaPI482276_05g025230.1 Cam05g2523 2523
5 33308534 33310027 + CaPI482276_05g025510.1 Cam05g2551 2551
4 9279911 9298713 - Carg01794-RA Car04g01606 1606
4 9303375 9304848 - Carg01792-RA Car04g01608 1608
4 9305578 9307362 - Carg01791-RA Car04g01609 1609
15 10050633 10054366 + Carg20754-RA Car15g01287 1287
18 10366488 10368093 - Carg21542-RA Car18g00987 987
18 10382940 10384067 - Carg21541-RA Car18g00988 988
5 34165522 34192826 - CcPI632755_05g025910.1 Cco05g2591 2591
5 34413618 34415113 + CcPI632755_05g026240.1 Cco05g2624 2624
5 36528049 36529224 - CePI673135_05g025510.1 Cec05g2551 2551
5 36750451 36750906 + CePI673135_05g025840.1 Cec05g2584 2584
10 15986058 16002498 + Chy10G182860.1 Chy10g01092 1092
10 16007401 16008776 + Chy10G182880.1 Chy10g01094 1094
10 16012385 16016212 + Chy10G182900.1 Chy10g01096 1096
10 16017121 16030570 + Chy10G182910.1 Chy10g01097 1097
5 33301148 33303552 - ClG42_05g0251800.10 Clacu05g2518 2518
5 33518965 33520455 + ClG42_05g0255300.10 Clacu05g2553 2553
5 35112106 35140193 - ClCG05G023270.2 Cla05g02354 2354
5 35364750 35371126 + ClCG05G023560.1 Cla05g02381 2381
15 9011218 9015237 + CmaCh15G014250.1 Cma15g01425 1425
18 8807888 8815175 - CmaCh18G010640.1 Cma18g01064 1064
18 8848329 8849906 - CmaCh18G010660.1 Cma18g01066 1066
10 2056269 2070134 - MELO3C012192.2.1 Cme10g00314 314
10 2072676 2074164 - MELO3C012190.2.1 Cme10g00316 316
10 2074838 2076490 - MELO3C012189.2.1 Cme10g00317 317
10 2078340 2079931 - MELO3C012188.2.1 Cme10g00318 318
10 19990927 20007358 + PI0028699.1 Cmetu10g0461 461
10 19974617 19975784 + PI0016879.1 Cmetu10g0942 942
10 19977290 19979911 + PI0018609.1 Cmetu10g1131 1131
10 19988607 19989935 + PI0012736.1 Cmetu10g1556 1556
4 8301773 8325191 - CmoCh04G016270.1 Cmo04g01627 1627
4 8326145 8327618 - CmoCh04G016290.1 Cmo04g01629 1629
4 8328349 8329500 - CmoCh04G016300.1 Cmo04g01630 1630
18 11381468 11382484 - CmoCh18G010840.1 Cmo18g01084 1084
18 11383837 11385545 - CmoCh18G010850.1 Cmo18g01085 1085
18 11401411 11402535 - CmoCh18G010870.1 Cmo18g01087 1087
5 33039134 33041543 - CmPI595203_05g023800.1 Cmu05g2380 2380
5 33256838 33258328 + CmPI595203_05g024100.1 Cmu05g2410 2410
6 2436127 2438532 + Conep06aG0049900.1 Cone6ag0489 489
9 2397393 2399679 + Conep09aG0051100.1 Cone9ag0501 501
13 7791261 7793262 - Conep13aG0090400.1 Cone13ag0877 877
13 7794158 7795789 - Conep13aG0090500.1 Cone13ag0878 878
19 6865654 6865983 - Conep19aG0090000.1 Cone19ag0876 876
1 8307136 8328586 - Cp4.1LG01g13330.1 Cpe01g01382 1382
1 8329897 8331340 - Cp4.1LG01g13310.1 Cpe01g01383 1383
1 8332113 8342459 - Cp4.1LG01g13360.1 Cpe01g01384 1384
9 1354722 1356979 - Cp4.1LG09g02350.1 Cpe09g00234 234
13 193934 198890 - Cp4.1LG13g00330.1 Cpe13g00022 22
5 36360630 36387302 - CrPI670011_05g024950.1 Cre05g2495 2495
5 36605986 36607603 + CrPI670011_05g025270.1 Cre05g2527 2527
5 26936282 26938713 + CsaV3_5G033720.1 Csa05g02553 2553
5 26942450 26943872 + CsaV3_5G033740.1 Csa05g02555 2555
5 26944943 26950803 + CsaV3_5G033750.1 Csa05g02556 2556
5 26951659 26965069 + CsaV3_5G033760.1 Csa05g02557 2557
10 55178227 55179369 + Hsped.10g18460.1 Hepe10g1846 1846
10 55182662 55185085 + Hsped.10g18470.1 Hepe10g1847 1847
10 55193568 55220400 + Hsped.10g18490.1 Hepe10g1849 1849
13 3037240 3038406 + Lag0040228.1 Lac13g0432 432
13 3043527 3045500 + Lag0040230.1 Lac13g0434 434
13 3055773 3061660 + Lag0040231.1 Lac13g0435 435
13 3061869 3069802 + Lag0040232.1 Lac13g0436 436
4 3165832 3167345 - Lsi04G003120.1 Lsi04g00312 312
4 3180363 3182825 - Lsi04G003140.1 Lsi04g00314 314
4 3183982 3187745 - Lsi04G003150.1 Lsi04g00315 315
4 3236708 3246705 - Lsi04G003170.1 Lsi04g00317 317
6 42552980 42554796 - Sed0026309.1 Sed06g1790 1790
6 42791076 42792525 - Sed0022479.1 Sed06g1837 1837
6 42804290 42805241 + Sed0023786.1 Sed06g1838 1838
7 34420402 34477410 + Sed0023728.1 Sed07g1969 1969
4 8062652 8095836 - Tan0022823.1 Tan04g0927 927
4 8143934 8146221 - Tan0014294.1 Tan04g0928 928
4 8152576 8154956 - Tan0017477.1 Tan04g0929 929
4 8183156 8184316 - Tan0007671.1 Tan04g0930 930
1 2006895 2039042 - Vvi1g201 Vvi1g201 201
1 2041853 2062434 - Vvi1g202 Vvi1g202 202
1 2080594 2083941 - Vvi1g203 Vvi1g203 203
1 2088885 2090223 + Vvi1g204 Vvi1g204 204
1 2094461 2096907 - Vvi1g205 Vvi1g205 205
1 2099998 2101337 + Vvi1g206 Vvi1g206 206
1 2104056 2126179 + Vvi1g207 Vvi1g207 207
1 2131270 2131795 - Vvi1g208 Vvi1g208 208
1 2136954 2137266 - Vvi1g209 Vvi1g209 209
1 2145559 2145874 - Vvi1g210 Vvi1g210 210
       

DecoBrowse