Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g212 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g213 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0488 Cone9ag0500 . . . . . Blo11g00818 Bda07g01514 . Bpe11g01677 . . . . . . . . . . Cpe13g00023 . Bhi12g01430 . . . . . . . . . . . . . . . . .
Vvi1g215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma15g01424 . Car15g01285 . . . . . . . . . . . . . . . . . . . .
Vvi1g216 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g217 . Blo16g01036 . Bda11g01113 Bpe13g01312 Bpe10g00948 . . Cmo04g01626 Cmo18g01082 . Cma18g01062 Car04g01604 Car18g00985 . Cpe09g00257 . Bhi07g01396 . . . . . . . . . . . . . Cone13ag0873 . Cone6ag0487 Cone9ag0499 . Csa05g02558 Chy10g01098 Cme10g00313 Blo06g00980 . . Bda11g01113 . . . Bma06g00792 . . Cmo15g01052 . Cma15g00997 . . . . . . . . . . . . . . . . . . . . . .
Vvi1g218 . . . . . . . . . . . . . . Sed06g1841 . Cpe01g01380 Bhi07g01394 Tan04g0925 Cmetu10g0241 . . . . Cla05g02352 . . . . . . Cone13ag0872 . . . Lsi04g00310 Csa05g02559 Chy10g01099 Cme10g00311 . . . . . . . . . . . . . . . . Cpe04g01419 . . . . . . . . . . . . . . . . . .
Vvi1g219 . Blo16g01042 . . Bpe13g01318 . Bma14g01685 . Cmo04g01623 Cmo18g01081 . Cma18g01061 Car04g01603 Car18g00984 . Cpe09g00258 Cpe01g01379 Bhi07g01392 . . . Hepe10g1852 . . Cla05g02349 Cam05g2520 Cec05g2547 . Clacu05g2515 Cmu05g2377 . Cone13ag0871 Cone19ag0872 Cone6ag0484 . Lsi04g00308 Csa05g02560 Chy10g01100 Cme10g00310 . Blo11g00820 Bda07g01516 . Bpe11g01678 . . Bma06g00785 . . . . Cma15g01422 . Car15g01283 Cpe13g00024 . Bhi12g01428 . . . Hepe02g2152 . . . . . . . . . . . . .
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 22 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
7 28146614 28150342 + Bda028364.1 Bda07g01514 1514
7 28211401 28215198 - Bda028367.1 Bda07g01516 1516
7 28220646 28225927 + Bda028368.1 Bda07g01517 1517
11 11007129 11010151 + Bda007591.1 Bda11g01113 1113
7 41846944 41852168 - XM_039035874.1 Bhi07g01388 1388
7 41907870 41915558 + XM_039037055.1 Bhi07g01392 1392
7 41917411 41918413 - XM_039035622.1 Bhi07g01394 1394
7 41928636 41933461 - XM_039036627.1 Bhi07g01396 1396
12 45882563 45891055 + XM_039018407.1 Bhi12g01428 1428
12 45905166 45912262 - XM_039019724.1 Bhi12g01430 1430
6 33101410 33106711 + BLOR17563 Blo06g00980 980
11 13501908 13510148 + BLOR03694 Blo11g00818 818
11 13537729 13543948 - BLOR03696 Blo11g00820 820
11 13588237 13597741 + BLOR03697 Blo11g00821 821
16 38800474 38803651 + BLOR21823 Blo16g01036 1036
16 38846490 38851081 - BLOR21829 Blo16g01042 1042
6 40441299 40446025 + Bma023796.1 Bma06g00785 785
6 40568896 40570682 - Bma023805.1 Bma06g00792 792
14 35901088 35906476 - Bma012429.4 Bma14g01685 1685
14 35911300 35917763 + Bma012430.1 Bma14g01686 1686
10 15024580 15029446 - Bpe003254.2 Bpe10g00948 948
11 13034077 13043340 + Bpe004990.1 Bpe11g01677 1677
11 13066056 13071478 - Bpe004992.1 Bpe11g01678 1678
11 13078565 13083273 + Bpe024857 Bpe11g01679 1679
13 18259946 18262861 + Bpe010975.1 Bpe13g01312 1312
13 18295379 18300003 - Bpe010981.1 Bpe13g01318 1318
5 33023174 33027838 - CaPI482276_05g025190.1 Cam05g2519 2519
5 33046188 33057020 + CaPI482276_05g025200.1 Cam05g2520 2520
4 9266211 9271497 + Carg01797-RA Car04g01603 1603
4 9273625 9277013 - Carg01796-RA Car04g01604 1604
15 10038789 10045030 + Carg20758-RA Car15g01283 1283
15 10046719 10049433 - Carg20756-RA Car15g01285 1285
18 10337126 10341732 - Carg21546-RA Car18g00983 983
18 10348396 10355190 + Carg21545-RA Car18g00984 984
18 10354626 10359325 - Carg21544-RA Car18g00985 985
5 34123174 34127830 - CcPI632755_05g025880.1 Cco05g2588 2588
5 36457502 36461873 - CePI673135_05g025460.1 Cec05g2546 2546
5 36480150 36490890 + CePI673135_05g025470.1 Cec05g2547 2547
10 16036981 16040474 + Chy10G182920.1 Chy10g01098 1098
10 16042203 16050361 + Chy10G182930.1 Chy10g01099 1099
10 16050399 16051123 - Chy10G182940.1 Chy10g01100 1100
10 16061559 16066151 + Chy10G182950.1 Chy10g01101 1101
5 33235316 33239980 - ClG42_05g0251400.10 Clacu05g2514 2514
5 33258268 33267511 + ClG42_05g0251500.10 Clacu05g2515 2515
5 35062875 35067539 - ClCG05G023220.1 Cla05g02348 2348
5 35088234 35096135 + ClCG05G023230.1 Cla05g02349 2349
5 35097989 35098474 - ClCG05G023255.1 Cla05g02352 2352
15 6038566 6040388 - CmaCh15G009970.1 Cma15g00997 997
15 8999195 9005969 + CmaCh15G014220.1 Cma15g01422 1422
15 9007798 9010675 - CmaCh15G014240.1 Cma15g01424 1424
18 8782182 8787451 - CmaCh18G010580.1 Cma18g01058 1058
18 8794419 8802229 + CmaCh18G010610.1 Cma18g01061 1061
18 8802449 8806549 - CmaCh18G010620.1 Cma18g01062 1062
10 2018909 2025404 - MELO3C012197.2.1 Cme10g00309 309
10 2035551 2042969 + MELO3C012196.2.1 Cme10g00310 310
10 2044305 2045317 - MELO3C012195.2.1 Cme10g00311 311
10 2046577 2051217 - MELO3C012194.2.1 Cme10g00313 313
2 1492034 1494810 - PI0007659.1 Cmetu02g0302 302
10 20018130 20019166 + PI0019943.1 Cmetu10g0241 241
4 8287111 8292653 + CmoCh04G016230.1 Cmo04g01623 1623
4 8295235 8299378 - CmoCh04G016260.1 Cmo04g01626 1626
15 6791948 6808460 + CmoCh15G010520.1 Cmo15g01052 1052
18 11354204 11358561 - CmoCh18G010800.1 Cmo18g01080 1080
18 11365450 11371905 + CmoCh18G010810.1 Cmo18g01081 1081
18 11371917 11376628 - CmoCh18G010820.1 Cmo18g01082 1082
5 32973297 32977961 - CmPI595203_05g023760.1 Cmu05g2376 2376
5 32996256 33006153 + CmPI595203_05g023770.1 Cmu05g2377 2377
6 2412016 2417901 + Conep06aG0049400.1 Cone6ag0484 484
6 2421458 2425005 - Conep06aG0049700.1 Cone6ag0487 487
6 2426534 2435860 - Conep06aG0049800.1 Cone6ag0488 488
9 2387964 2391727 - Conep09aG0050900.1 Cone9ag0499 499
9 2393560 2396977 - Conep09aG0051000.1 Cone9ag0500 500
13 7754225 7758692 - Conep13aG0089700.1 Cone13ag0870 870
13 7765056 7770090 + Conep13aG0089800.1 Cone13ag0871 871
13 7770620 7771258 - Conep13aG0089900.1 Cone13ag0872 872
13 7771553 7774995 - Conep13aG0090000.1 Cone13ag0873 873
19 6823798 6828346 - Conep19aG0089500.1 Cone19ag0871 871
19 6833295 6840345 + Conep19aG0089600.1 Cone19ag0872 872
1 8291914 8297620 + Cp4.1LG01g13410.1 Cpe01g01379 1379
1 8296915 8299220 - Cp4.1LG01g13290.1 Cpe01g01380 1380
4 11401670 11402152 + Cp4.1LG04g14140.1 Cpe04g01419 1419
9 1497415 1499376 + Cp4.1LG09g02660.1 Cpe09g00257 257
9 1499250 1509484 - Cp4.1LG09g02710.1 Cpe09g00258 258
9 1516383 1520907 + Cp4.1LG09g02590.1 Cpe09g00259 259
13 200014 203297 + Cp4.1LG13g00230.1 Cpe13g00023 23
13 204020 211324 - Cp4.1LG13g00310.1 Cpe13g00024 24
5 36311127 36315860 - CrPI670011_05g024920.1 Cre05g2492 2492
5 26969429 26974430 + CsaV3_5G033770.1 Csa05g02558 2558
5 26975183 26976800 + CsaV3_5G033780.1 Csa05g02559 2559
5 26977036 26985427 - CsaV3_5G033790.1 Csa05g02560 2560
5 26993878 27000174 + CsaV3_5G033800.1 Csa05g02561 2561
2 58261726 58269164 - Hsped.02g21520.1 Hepe02g2152 2152
10 55234707 55241272 - Hsped.10g18520.1 Hepe10g1852 1852
10 55259829 55265969 + Hsped.10g18530.1 Hepe10g1853 1853
13 3126914 3131798 + Lag0040237.1 Lac13g0441 441
4 3106099 3111129 - Lsi04G003070.1 Lsi04g00307 307
4 3125165 3133808 + Lsi04G003080.1 Lsi04g00308 308
4 3135421 3135906 - Lsi04G003100.1 Lsi04g00310 310
6 42817064 42818030 + Sed0016193.1 Sed06g1841 1841
8 26667350 26670358 - Sed0017104.1 Sed08g1290 1290
4 8006234 8010952 - Tan0009024.1 Tan04g0923 923
4 8038487 8039840 - Tan0009384.1 Tan04g0925 925
1 2147400 2148062 - Vvi1g211 Vvi1g211 211
1 2171000 2171522 - Vvi1g212 Vvi1g212 212
1 2197475 2202142 + Vvi1g213 Vvi1g213 213
1 2202687 2225478 + Vvi1g214 Vvi1g214 214
1 2225929 2235300 + Vvi1g215 Vvi1g215 215
1 2235672 2237099 - Vvi1g216 Vvi1g216 216
1 2241577 2247262 + Vvi1g217 Vvi1g217 217
1 2251731 2252693 + Vvi1g218 Vvi1g218 218
1 2253558 2261347 - Vvi1g219 Vvi1g219 219
1 2273538 2280301 + Vvi1g220 Vvi1g220 220
       

DecoBrowse