Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g886 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g887 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g888 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g889 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g890 Blo02g00869 . . . . . . Bma12g00367 . . . . . . . . Cpe15g00387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g891 . . . . . . Bma05g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g892 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g893 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g894 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g895 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 327 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
2 33613475 33623420 - BLOR10599 Blo02g00869 869
5 35840271 35850163 + Bma021609.1 Bma05g00591 591
12 6536750 6541247 + Bma007299.1 Bma12g00367 367
5 18586578 18595855 + Bpe017838.2 Bpe05g00420 420
15 5089964 5092328 - Cp4.1LG15g03880.1 Cpe15g00387 387
3 11437313 11437938 + Vvi3g886 Vvi3g886 886
3 11438315 11441974 + Vvi3g887 Vvi3g887 887
3 11515236 11518011 + Vvi3g888 Vvi3g888 888
3 11518053 11523487 - Vvi3g889 Vvi3g889 889
3 11598410 11619004 - Vvi3g890 Vvi3g890 890
3 11685126 11703195 - Vvi3g891 Vvi3g891 891
3 11724502 11725430 + Vvi3g892 Vvi3g892 892
3 11784903 11785720 - Vvi3g893 Vvi3g893 893
3 11795552 11801564 + Vvi3g894 Vvi3g894 894
3 11803848 11814676 - Vvi3g895 Vvi3g895 895
       

DecoBrowse