Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01336 ATGTCACCGATTTTCTCGCCCGAAGAAATCAGTGCGATCAACACGACGGTGGTGGTGCAACTGAAGGAGGTTGTTCTCGACAACAGTGACATTTCCAAAGCTCTTCTGGATTATGTATACAGTAATTGCATAAACAACATTGTTGTAGGTGCTTCAGCAAGAAGTGCTCTAGCTAGGAAATTCAAAGGTTACGACGTTCCGACCAACATAATAAATGTTGCCAACACAGCAACACCACCAAGACAGCCATCTCCCATGGCATTTCTTCCTCAAGCTCAGGCTGATAATGGCGACCCGGAAAATGCAGGCAGACCAGGTCAACCTCCGAGGGGAGGATGGAAAAGTGCAGGGGCGAATAACCAAACAAAGGGAATGACACGAGAGAGACCGAGGAGTTCTCTGACGAATATCTCAATGGAGAGCCTTGACCGAGATCTAGAGGCAGAAATGAAGAGATTAAAGTTAGAGCTTAAGCAAACCATGGATATGTATAGCTCAGCTTGCAAAGAAGCAATCTCAGCTAAAAACAAGGTAATTTTATCACTCCATCAATGGAAGGTAGAGGAGGCTCGAAAACTGGAGGAAGTGAAACTTGCAGAGGAGGCAGCTCTTGCCATTGCAGAGATGGAGAAAGCCAAGAAGAGGGCCGAAGAGAAGAATCGGGCATTGGACTGCATTAGCGCACGGTACAGAAAATACAGCATTGATGAGATTGAAACTGCCACTGAGAAATTCTCCGATGACCTGAAGATCGGCGTCGAAGTACTCAGCTGCATAAGGTTTCGCCGGGGAAATACTCCTCCGATATCGTGGAGAAGACGATTCAAAATATCAGCAGAAGTCGCCACAGCTCTCTTGTTTCTCCACCAATCAAAACCTGAGCCTCTCTTAACAACTAAGTCGGATGTGTACTCCGTTTGGTATAATGCTTCTCCAAATCATCCGGCCAAGCCGCCGATGGGTCTGGCTCACCATGTTATGAAACCCGACCTCTGGGCTTCGTTGGCTGATGAGGTGCCTGCATGGGTTTCAGATAAAAGAAACAGAGCATCAGTTGATCGAACTTTGAGTTGGCTCGATGAATGTATCAAGTTAAACTCAACAGGTGGAGCTATTTTTGGAGCAGTTGTTGGAGGGTCATCAATGGAAGAGCGTCTAAGGTGTGCGGAAGAAGTTGCCAAGCGTGATGTATCAGGTTATTGGATAGGAGGTTTTGGGCTTGGAGAGAGCATGGATGAGCGTCCTACTCTCCTTAATGCTGTTACAGATATATTACCAGAGGCAAAACCGCGCATGATTTGCGGGCTTGGACTTCCAGAGGAGGTCTTGCAGGGCATTGCTGCTGGTGTTGACCTTTTCGATTCAACGTATATATACCATCTTACACTTGGAGGGTTTGCTCTAGTCTTTCCACTGGATAGCGTAGAGATGAATCTTTCCAATTTGCAGCTGAACGACACCGGGAATGACCTGACGAAAATTAACATGAGAGCAACAGTATATAGGAAAGATTCTTCGCGGATCGTGGAAGGCTGTAGCTGCTATACTTGCCAGAATCACACAAAAGCTTATATCAATCATTTGCTCAATGTGCATGAGATGCTGGCTCAGATACTTCTAGAAATACATAATACCCATCACTATTTGGGTTTCTTTCGATCGATACGAGAAGCGATAAAGGCCGGAAAGTTTCAGCAATTTCATCAAAATTTTATCGAGAAGAGGCGCGGTCATTTGGCGTTGTCAGCTATGTGTTCATGA 1761 45.77 MSPIFSPEEISAINTTVVVQLKEVVLDNSDISKALLDYVYSNCINNIVVGASARSALARKFKGYDVPTNIINVANTATPPRQPSPMAFLPQAQADNGDPENAGRPGQPPRGGWKSAGANNQTKGMTRERPRSSLTNISMESLDRDLEAEMKRLKLELKQTMDMYSSACKEAISAKNKVILSLHQWKVEEARKLEEVKLAEEAALAIAEMEKAKKRAEEKNRALDCISARYRKYSIDEIETATEKFSDDLKIGVEVLSCIRFRRGNTPPISWRRRFKISAEVATALLFLHQSKPEPLLTTKSDVYSVWYNASPNHPAKPPMGLAHHVMKPDLWASLADEVPAWVSDKRNRASVDRTLSWLDECIKLNSTGGAIFGAVVGGSSMEERLRCAEEVAKRDVSGYWIGGFGLGESMDERPTLLNAVTDILPEAKPRMICGLGLPEEVLQGIAAGVDLFDSTYIYHLTLGGFALVFPLDSVEMNLSNLQLNDTGNDLTKINMRATVYRKDSSRIVEGCSCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKAGKFQQFHQNFIEKRRGHLALSAMCS 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49040706 49049969 + Bda003572.1 Bda01g01336 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01336 586 MobiDBLite consensus disorder prediction 114 136 - -
Bda01g01336 586 TIGRFAM tgt_general: tRNA-guanine family transglycosylase 330 575 IPR002616 GO:0006400|GO:0016763
Bda01g01336 586 MobiDBLite consensus disorder prediction 75 136 - -
Bda01g01336 586 SUPERFAMILY tRNA-guanine transglycosylase 325 574 IPR036511 GO:0006400|GO:0016763
Bda01g01336 586 Coils Coil 199 229 - -
Bda01g01336 586 Gene3D - 322 576 IPR036511 GO:0006400|GO:0016763
Bda01g01336 586 Hamap Queuine tRNA-ribosyltransferase accessory subunit 2 [QTRT2]. 118 570 IPR028592 GO:0006400|GO:0008479
Bda01g01336 586 Coils Coil 139 163 - -
Bda01g01336 586 Pfam Queuine tRNA-ribosyltransferase 325 576 IPR002616 GO:0006400|GO:0016763
Bda01g01336 586 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2 325 579 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01336 Bda03g00481 CCT
Bda01g01336 Bda13g01593 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01336 Bda-Chr1:49040706 Bda01g01369 Bda-Chr1:49565629 9.11E-92 dispersed
Bda01g01336 Bda-Chr1:49040706 Bda01g01340 Bda-Chr1:49098768 3.39E-145 proximal
Bda01g01336 Bda-Chr1:49040706 Bda13g01593 Bda-Chr13:39499540 5.06E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01336 K15407 - qsu:112006576 430.639