Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00342 ATGGTGAAGGACACCGAATACTACGACGTGCTTGGAGTCAGCCCCACCGCCTCCGAGGCCGAGATCAAGAAAGCATACTATTTGAAGGCGAGACAAGTCCATCCAGATAAAAATCCAAACGACCCACTTGCAGCACAAAATTTTCAGGTGTTGGGAGAGGCTTACCAGGTATTAAGTGATCCAGGACAACGACAAGCATATGATTCTTACGGAAAATCTGGAGTTTCAACCGACGCAATTATTGATCCAGCAGCCATCTTTGCCATGCTTTTTGGGAGTGAGCTTTTTGAAGAATATATTGGCCAGCTGGCAATGGCATCAATGGCTTCACTAGATATTTTTACGGAAGGGGAGCAGTTTGATGCCAAAAAGTTGCAGGAGAAAATGAGGATAGTTCAAAAGGAAAGAGAGGAAAAGCTTGCACAAATACTGAAAGATCGATTAAACCAGTATGTGCAAGGTAGTAAAGAAGAATTTATTAACCACGCGGAAGCTGAAGTAGCAAGACTTTCCAATGCAGCCTACGGCGTTGACATGTTAAATACAATAGGCTACATATATGCCAGACAGGCAGCGAAAGAACTGGGGAAGAAAGCAATATATTTGGGTGTGCCCTTTGTTGCTGAGTGGTTTAGGAACAAAGGTCACTTTATAAAATCCCAAGTTACAGCTGCAACAGGTGCGATTGCTCTGATTCAGCTCCAGGAGGATATGAAAAAGCAACTTAGTGGAGAAGGAAACTACACCGAGGAAGAGCTTGAGTTATATGTTCAATCTCACAAGAAATTGATGATTGATTCCCTTTGGAAGCTTAATGTTGCCGATATTGAGGCTACACTTTCCCGTGTTTGTCAAATGGTACTCCAAGATAATAATGTCAAGAAGGAAGAACTCCGAGCACGAGCAAAAGGGTTAAAGAATCTTGGTAAAATCTTTCAGGTACTGCCTTTTATACATTCTTTTCATGTATTTTAA 975 41.95 MVKDTEYYDVLGVSPTASEAEIKKAYYLKARQVHPDKNPNDPLAAQNFQVLGEAYQVLSDPGQRQAYDSYGKSGVSTDAIIDPAAIFAMLFGSELFEEYIGQLAMASMASLDIFTEGEQFDAKKLQEKMRIVQKEREEKLAQILKDRLNQYVQGSKEEFINHAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFVAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKKQLSGEGNYTEEELELYVQSHKKLMIDSLWKLNVADIEATLSRVCQMVLQDNNVKKEELRARAKGLKNLGKIFQVLPFIHSFHVF 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2893279 2898192 - Bda016303.1 Bda03g00342 3601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00342 324 Pfam DnaJ domain 6 68 IPR001623 -
Bda03g00342 324 PRINTS DnaJ domain signature 43 63 IPR001623 -
Bda03g00342 324 PRINTS DnaJ domain signature 63 82 IPR001623 -
Bda03g00342 324 PRINTS DnaJ domain signature 8 26 IPR001623 -
Bda03g00342 324 PRINTS DnaJ domain signature 26 41 IPR001623 -
Bda03g00342 324 CDD DnaJ 6 60 IPR001623 -
Bda03g00342 324 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Bda03g00342 324 PANTHER CHAPERONE PROTEIN DNAJ 10-LIKE ISOFORM X1 1 313 - -
Bda03g00342 324 Coils Coil 122 142 - -
Bda03g00342 324 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 313 - -
Bda03g00342 324 SMART dnaj_3 5 63 IPR001623 -
Bda03g00342 324 Pfam X-domain of DnaJ-containing 133 313 IPR026894 -
Bda03g00342 324 Gene3D DnaJ domain 1 83 IPR036869 -
Bda03g00342 324 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Bda03g00342 324 Coils Coil 288 308 - -
Bda03g00342 324 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01580 Bda03g00342 CCT
Bda01g01383 Bda03g00342 CCT
Bda01g01580 Bda03g00342 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00342 Bda-Chr3:2893279 Bda08g00944 Bda-Chr8:17708643 2.31E-128 dispersed
Bda15g00888 Bda-Chr15:14584724 Bda03g00342 Bda-Chr3:2893279 3.24E-12 dispersed
Bda15g00892 Bda-Chr15:14627558 Bda03g00342 Bda-Chr3:2893279 2.92E-06 dispersed
Bda03g00342 Bda-Chr3:2893279 Bda01g01383 Bda-Chr1:49717568 1.10E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00342 - - vvi:100259812 580.482