Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00481 TCGAAGATTCTTGGGAGATTCAATCGTGCTCGTGCAGCACAGCTCACACTCCCTCACTTCGTATGCCAGACGCCACTTTTCATGCCAGTGGGGACACAAGGGACCATAAAAGGTTTGACAACTAGCCAACTTGAGGAAATTGGCTGCCAAATCATACTTGGAAACACATACCATTTGGCTCTTCGTCCTACGTCAGAGCTTATTGATGAGTTGGGAGGTCTCCACAAGTTCATGAACTGGCCTAGAGCACTGCTTACTGACTCTGGTGGCTTTCAAATGGTTGTATCTTTACTGCATTTAGCAGACATCACTGAAAAAGGTGTAACATTTCAGTCGCCCATTGATGGAAAGCCAATGCTTCTGACGCCAGAGGAGTCGATACAAATCCAAAATAGAATTGGAGCTGATATTATTATGGCTCTTGATGATGTAGTTAGAACCACAATTACTGGTCCAAGAGTTGAGGAAGCCATGTATCGCACTCTTCGATGGATAGATAGATGTATAGCTGCTCATGAGAGACCTAATGAGCAGAATTTATTTGGTATTGTACAAGGTGGTTTAGATCCTGTGTTAAGGGACATATGTGTTAGAGGCCTGGTAGAACGGAAATTACCTGGCTATGCTATTGGTGGTCTTTCAGGAGGTGAAGACAAAGATTCATTTTGGCGCGTTGTTGCTCAGTGCACGGCTTCATTGCCTGAGGATAAACCTCGATATGTTATGGGTGTTGGTTATCCTCTAGATATTGTGGTTTGCAGTGCCTTGGGTGCCGACATGTATGACTGCGTTTATCCTACTCGCACTGCCCGGTTTGGCACGGCTCTTATTCCAGAGGGAGTGCTTAAACTAAAGCATAATGCCATGGCTGATGACACTCGTCCTATTGATCCTTCATGCACTTGTTTGGTTTGCAAGAACTATACAAGAGCCTATATTCATTGCCTCGTTACCAAAGATGCCATGGGATCTCAGCTTCTATCCTATCATAATTTGCACTACATGTTGAAGCTTAGTAGAGATCTGCATTTCTCAATCGTCCAAGGAAAATTTCCAGAGTTCGTGTGCAACTTTCTGCAAAAGATGTTCCCAGAAGGTGATGTTCCTGAATGGGTCTGTAATGCCATGGAAGTTGCTGGAATTGATATTTCTTCTTGCTGCTCTCCGTTCAAGACTAGGTATAACAAACACACTTCAAACTAG 1203 43.89 SKILGRFNRARAAQLTLPHFVCQTPLFMPVGTQGTIKGLTTSQLEEIGCQIILGNTYHLALRPTSELIDELGGLHKFMNWPRALLTDSGGFQMVVSLLHLADITEKGVTFQSPIDGKPMLLTPEESIQIQNRIGADIIMALDDVVRTTITGPRVEEAMYRTLRWIDRCIAAHERPNEQNLFGIVQGGLDPVLRDICVRGLVERKLPGYAIGGLSGGEDKDSFWRVVAQCTASLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALIPEGVLKLKHNAMADDTRPIDPSCTCLVCKNYTRAYIHCLVTKDAMGSQLLSYHNLHYMLKLSRDLHFSIVQGKFPEFVCNFLQKMFPEGDVPEWVCNAMEVAGIDISSCCSPFKTRYNKHTSN 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4146308 4151806 + Bda016451.1 Bda03g00481 3740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00481 400 Pfam Queuine tRNA-ribosyltransferase 9 362 IPR002616 GO:0006400|GO:0016763
Bda03g00481 400 TIGRFAM Q_tRNA_tgt: tRNA-guanine transglycosylase 6 362 IPR004803 GO:0008479|GO:0101030
Bda03g00481 400 Gene3D - 2 364 IPR036511 GO:0006400|GO:0016763
Bda03g00481 400 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 3 386 - -
Bda03g00481 400 TIGRFAM tgt_general: tRNA-guanine family transglycosylase 6 362 IPR002616 GO:0006400|GO:0016763
Bda03g00481 400 Hamap Queuine tRNA-ribosyltransferase [tgt]. 3 361 IPR004803 GO:0008479|GO:0101030
Bda03g00481 400 SUPERFAMILY tRNA-guanine transglycosylase 3 361 IPR036511 GO:0006400|GO:0016763
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01336 Bda03g00481 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g01266 Bda-Chr4:63191323 Bda03g00481 Bda-Chr3:4146308 8.11E-104 transposed
Bda01g01369 Bda-Chr1:49565629 Bda03g00481 Bda-Chr3:4146308 3.03E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00481 K00777 - csin:114287940 764.222