Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda08g00772 ATGGCGATTGTTAAAAGTGAAGAAACAGAAGAAGAGAGACAGAAGAGTTTGTTCTTTTTAGACTCTCTCTACTGTTACGAAGAGAGATGGGAGGAAGACGAAGACGAAGAAGAAGATGATGAATGTGAAGAGAGTTCAGAAGAAGAAGAAGAAGAAGAAGAGCTTCTCTCTCTAATCTCCAAAGAAGAAGAAGAACACCAACGTCAGATTGTGGAAAATTTCAAATGTGATACAGTTCTGTGTTTGGCTCGCTCTGAGGCTGTGAAGTGGATTCTAAAAGTTAAAACCCAGTTTGGATTCTCAGCTTTGACCGCCATTTTAGCCATCAACTACCTCGATCGGTTCTTGTCTAGTCTACAGTTTCAGAGAGAGAAGCCATGGATGAGTCAACTCGTTGCCGTTGCTTGCCTCTCACTTGCAGCGAAAGTGGAAGAAACACAAGTCCCTCTTCTTCTCGATCTTCAAGTAGAGGAGACAGAATTTGTCTTTGAAGGGAAAACGGTTCAGAGAATGGAGCTTCTTGTTCTTTCTGCTCTTCAATGGCGGATGCATCCAGTAACTCCATATTCATTTATGGATCTCATCGCCAGGAAGATCGGATTAAAGACCAATTTATATCATGAATTTCTTAGTCTTTTCGATAGTCTTCTTCTCTCACTACTCGCAGATTCAAGATCCGTGAGTTATCTTCCTTCTGCCATAGCTGCCGCTGCAACGGTGAGAATTTTAGACGAGATAGAGCCCCGTAAATCAATGGAATACAAGAACCAGATTCTGGGTATTCTTAAAATGAACAAAGATAATTTAAGTGACTGTTACGGTCTGTTACTTGAGCCGTCGAACGATATCAATGGCGGTGAAACCTCCGTAAGGAGAAGATTCTATCAAGTTACCGGGAGGCCAAATGGAGTCGGCGATGCTGTTTTTAGCTCCGACTGCTCTAATGATTCCTGGTCTGTGCTTTCTTCCCCTGTTTCTCCTCTCGTAGAACCGCCATTAAAGAAAAGCAGAGCTCAAAATCAGATGGCGAAATTTCCATCCTTGGTTACTTGA 1053 42.45 MAIVKSEETEEERQKSLFFLDSLYCYEERWEEDEDEEEDDECEESSEEEEEEEELLSLISKEEEEHQRQIVENFKCDTVLCLARSEAVKWILKVKTQFGFSALTAILAINYLDRFLSSLQFQREKPWMSQLVAVACLSLAAKVEETQVPLLLDLQVEETEFVFEGKTVQRMELLVLSALQWRMHPVTPYSFMDLIARKIGLKTNLYHEFLSLFDSLLLSLLADSRSVSYLPSAIAAAATVRILDEIEPRKSMEYKNQILGILKMNKDNLSDCYGLLLEPSNDINGGETSVRRRFYQVTGRPNGVGDAVFSSDCSNDSWSVLSSPVSPLVEPPLKKSRAQNQMAKFPSLVT 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10024538 10025922 - Bda029274.1 Bda08g00772 11628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda08g00772 350 PANTHER CYCLINS 44 336 IPR039361 -
Bda08g00772 350 CDD CYCLIN 84 176 IPR013763 -
Bda08g00772 350 Gene3D - 62 273 - -
Bda08g00772 350 Pfam Cyclin, N-terminal domain 82 183 IPR006671 -
Bda08g00772 350 SUPERFAMILY Cyclin-like 51 184 IPR036915 -
Bda08g00772 350 ProSitePatterns Cyclins signature. 84 115 IPR006671 -
Bda08g00772 350 PANTHER CYCLIN D3.1 PROTEIN 44 336 - -
Bda08g00772 350 Coils Coil 32 65 - -
Bda08g00772 350 MobiDBLite consensus disorder prediction 30 56 - -
Bda08g00772 350 MobiDBLite consensus disorder prediction 330 350 - -
Bda08g00772 350 Gene3D - 68 184 - -
Bda08g00772 350 SMART Cyclin_C_2 186 313 IPR004367 -
Bda08g00772 350 SUPERFAMILY Cyclin-like 168 277 IPR036915 -
Bda08g00772 350 Pfam Cyclin, C-terminal domain 186 288 IPR004367 -
Bda08g00772 350 SMART cyclin_7 89 177 IPR013763 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00772 Bda14g01452 CCT
Bda08g00772 Bda15g00846 CCT
Bda08g00772 Bda14g01452 ECH
Bda08g00772 Bda15g00846 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00772 Bda-Chr8:10024538 Bda15g00846 Bda-Chr15:12997850 9.68E-96 dispersed
Bda08g00772 Bda-Chr8:10024538 Bda14g01452 Bda-Chr14:19597163 1.34E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda08g00772 K14505 - vvi:100264093 301.212