Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00846 ATGGAATTACATCCGAACGACCCACAGAACCAGACCCCTTCCTTGTTTCTGGACTCCCTATACTGTGAGGATGAAAAATGGGACGAGGAGCAAGAAACAGTAGATCAAGGTTTTTCAGTAGCGACGAGTAGGAATGGCGTCGTCTGTAATCTCTCCTGTGAAGAAGCTCCAGCTTTTTGGGTAGATGAAGAGCTTTTATCTCTTTTCTCTAGAGAGGAAGAACAGCTGCGCCAAACCCATGTCTGTCTAGCAAGTTTGAAAGCAGATCGACACCTCGCTGCAGCTCGTTCTGAGGCTGTGGAATGGATTCTAAAAGTGAATGCTCATTACGGATTTACTGCCCTTACGGCCATTTTAGCCATTAACTATCTTCAAAGGTTTCTCTCTAGCCTCCATTTTCAGAGAGATAAACCTTGGATTGTTCAGCTTGTCGCTGTCACTTGTCTCTCTTTGGCCGCAAAAGTGGAAGAAATCCAAGTTCCTCTTCTTCTAGACCTCCAAGTGGAAGGGACTAAATTTGTTTTTGAAGCGAAAACAATACAGAAAATGGAGTTGTTAGTGCTATCGAGTCTTCAATGGCGGATGCATCCAGTGACCCCACTTTCATTTCTCGACCACATCATGAAAAGGTTGGGATTTGATAACCATCTTTATTGGGAGTTTATCAGATGCTGTGAGAGTCTCCTTCTCTCTCTATCCTCAGACTCAAGATCCATCATTTATCTCCCTTCTGTGATTGCCACTGCAACAATGATGCACGCCATTGAACAGCTCGAAGGCTGTAGCCCATTACAGGCTCAACTTCTGAATGTCCTTAACATAGTAAGGGAAAGGGTGGAAGAGTGTTATAAACTTATAAAAGAGGTGAAGGTCTTCGTCAATAATCCTCTCAAGCGTAAGGAGCGAGCTCCAAGGAGCCCAAGCGGAGTGATGGATGGCTTCTTGAGCTCAGATAGCTCCAATGATTCCTGGCTGTCAATCGGTTCATCTTCTTCATCAGTTTATTCATCGCCAGAACCTCCATTCAAGAAGAGCAGAGGCCAAGACCAGCAAATGAGGTTGCCTTCTTTACTCAACCGAGTTTTCATTGATGTTGGTGCCAGCCCTCCTTAG 1113 44.92 MELHPNDPQNQTPSLFLDSLYCEDEKWDEEQETVDQGFSVATSRNGVVCNLSCEEAPAFWVDEELLSLFSREEEQLRQTHVCLASLKADRHLAAARSEAVEWILKVNAHYGFTALTAILAINYLQRFLSSLHFQRDKPWIVQLVAVTCLSLAAKVEEIQVPLLLDLQVEGTKFVFEAKTIQKMELLVLSSLQWRMHPVTPLSFLDHIMKRLGFDNHLYWEFIRCCESLLLSLSSDSRSIIYLPSVIATATMMHAIEQLEGCSPLQAQLLNVLNIVRERVEECYKLIKEVKVFVNNPLKRKERAPRSPSGVMDGFLSSDSSNDSWLSIGSSSSSVYSSPEPPFKKSRGQDQQMRLPSLLNRVFIDVGASPP 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 12997850 12999358 - Bda012719.1 Bda15g00846 22541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00846 370 SUPERFAMILY Cyclin-like 199 289 IPR036915 -
Bda15g00846 370 CDD CYCLIN 96 188 IPR013763 -
Bda15g00846 370 Pfam Cyclin, C-terminal domain 198 296 IPR004367 -
Bda15g00846 370 PANTHER CYCLIN D3.1 PROTEIN 41 346 - -
Bda15g00846 370 SUPERFAMILY Cyclin-like 58 196 IPR036915 -
Bda15g00846 370 Gene3D - 69 284 - -
Bda15g00846 370 Pfam Cyclin, N-terminal domain 69 195 IPR006671 -
Bda15g00846 370 MobiDBLite consensus disorder prediction 318 339 - -
Bda15g00846 370 SMART Cyclin_C_2 198 338 IPR004367 -
Bda15g00846 370 PANTHER CYCLINS 41 346 IPR039361 -
Bda15g00846 370 SMART cyclin_7 101 189 IPR013763 -
Bda15g00846 370 MobiDBLite consensus disorder prediction 318 355 - -
Bda15g00846 370 Gene3D - 78 196 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda08g00772 Bda15g00846 CCT
Bda08g00772 Bda15g00846 ECH
Bda14g01452 Bda15g00846 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00772 Bda-Chr8:10024538 Bda15g00846 Bda-Chr15:12997850 9.68E-96 dispersed
Bda11g01447 Bda-Chr11:19956301 Bda15g00846 Bda-Chr15:12997850 3.38E-78 dispersed
Bda15g00846 Bda-Chr15:12997850 Bda01g02234 Bda-Chr1:58166437 1.34E-44 dispersed
Bda14g01452 Bda-Chr14:19597163 Bda15g00846 Bda-Chr15:12997850 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00846 K14505 - tcc:18607985 379.022