Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01115 ATGGCTAGTAACGCAGCGGCCTGTGCAGAGAGGGCAACCAGCGATATGCTGATTGGCCCGGACTGGGCTATTAACATTGAGCTCTGCGATATTATTAACATGGAACCTGGGCAAGCGAAGGATGCCTTGAAGATACTCAAAAAGCGTCTGGCCGCTAAAATTCCCAGCATACAGCTTCTTGCTCTTTTTGCATTGGATACTATCAGCAAAAATTGTGGTGAACATGTATTTCAAGTGATCATTGAGCGTGACATCCTACACGATATGGTTAAAATAGTAAAGAAGAAGCCAGATTTCAGAGTAAAAGATAAGATATTGAGTTTAATTGATGCATGGCAAGAAGCTTTTGGGGGACCAAGTGGTAGATATCCTCAGTACTATTCGGCCTACAACGAATTAAAGAGTGCTGGAATTTCATTTCCACCTCGAGAAGACAATGGAGTACCGTTTTTCACTCCACCCCAGACCCAGCCTATAGTTCACCATCCTGTCTCAACCTATGATGACCCAGTTCTTCAGGCATCTCTCCAGTCTGATGCTTCCGGTCTTAGCTTGCCAGAAATTCAGACAGCCCGGGGACTGACAGATGTGTTAATGGAAATGCTTGGTGCTTTGGATCCTAGGAAACCAGAGTGTGTGAAGGAAGAAGTAATTGTTGACCTGGTAGAGCAGTGTCGATCTTACCAAAAGCGTGTGATGCTACTTGTGAATGAGACCGCAGATGAAGAGCTTTTGTGTCAGGGTTTGGCGTTGAATGACAGTTTGCAGCGTGTACTTGGTCGGCATGATGACATTGTGAATAGAGCCTCCATTACAGGTGGAAGAGAAACTGAATCGTCAGTCCCGCCAATGTTCGATGTCAACCATGATGATGATGATGATTCAGAAGCTGAGTTTGCACAGCTAGCTCACAGAGCATCCAGAGAGAAATTCCAAGGGTCCAAGAGATCATCCAATGGCGGCTCTGATCAAGCGCGAATCAACCCTCTACTTCCTCCGCCCCCCTCATCAAAAACGCCTGTTTCTTCTCGTGACACTGCCATGGTTGATTATCTAAGTGGCGACCTTTACAAGTCCAACGAATCTTACCAAAGCTCGAGACCCACTTTGACCGATGCACCTCCCTCTCTCACAACTTCAAATCAACCGTTGAATCCAACTCTATCTTCTTCACCTCCTTATTCTCATCGCAAAACCTCCCTCATATCACCCTTAACTGGCCTGCCTGTTTTTGACGAACCAGCTCCGAGAAACAGTTCGACGGACCCACTTCCTCCAGCCCCTTGGGATGGTCAGCCTCCTGCTTCCCTCCCTCCCCCGCCCTCGAGATATAATCAGAGGCAGCAGTTTTTCGAGCAAAAACAAGGTCTTGGTGGCAGTTCTTCGTATCCAAGCAGTGAATCTGGTTCCTCCTATGACAGCCTAGTCGGATCAACTCAAAGTCTCAATCTCAATCCATTTGCACCAACTAAACAGGAGAAACGGGAAGACGCCCTCTTTAAAGACCTTGTTGATTTTGCAAAATCCAAGTCTTCTTCGCCCTCCAAACCCAACAACAGGTCCTACTAG 1569 46.91 MASNAAACAERATSDMLIGPDWAINIELCDIINMEPGQAKDALKILKKRLAAKIPSIQLLALFALDTISKNCGEHVFQVIIERDILHDMVKIVKKKPDFRVKDKILSLIDAWQEAFGGPSGRYPQYYSAYNELKSAGISFPPREDNGVPFFTPPQTQPIVHHPVSTYDDPVLQASLQSDASGLSLPEIQTARGLTDVLMEMLGALDPRKPECVKEEVIVDLVEQCRSYQKRVMLLVNETADEELLCQGLALNDSLQRVLGRHDDIVNRASITGGRETESSVPPMFDVNHDDDDDSEAEFAQLAHRASREKFQGSKRSSNGGSDQARINPLLPPPPSSKTPVSSRDTAMVDYLSGDLYKSNESYQSSRPTLTDAPPSLTTSNQPLNPTLSSSPPYSHRKTSLISPLTGLPVFDEPAPRNSSTDPLPPAPWDGQPPASLPPPPSRYNQRQQFFEQKQGLGGSSSYPSSESGSSYDSLVGSTQSLNLNPFAPTKQEKREDALFKDLVDFAKSKSSSPSKPNNRSY 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28802490 28805746 + BLOR05134 Blo12g01115 68376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01115 522 MobiDBLite consensus disorder prediction 298 312 - -
Blo12g01115 522 PANTHER TOM1-LIKE PROTEIN 1 521 IPR044836 GO:0035091|GO:0043130|GO:0043328
Blo12g01115 522 SUPERFAMILY GAT-like domain 145 267 - -
Blo12g01115 522 PIRSF TOM1 1 522 IPR014645 -
Blo12g01115 522 MobiDBLite consensus disorder prediction 359 496 - -
Blo12g01115 522 CDD VHS 10 135 - -
Blo12g01115 522 SUPERFAMILY ENTH/VHS domain 8 142 IPR008942 -
Blo12g01115 522 Pfam VHS domain 9 136 IPR002014 GO:0035091|GO:0043130
Blo12g01115 522 MobiDBLite consensus disorder prediction 442 488 - -
Blo12g01115 522 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Blo12g01115 522 MobiDBLite consensus disorder prediction 419 441 - -
Blo12g01115 522 Gene3D - 2 141 IPR008942 -
Blo12g01115 522 MobiDBLite consensus disorder prediction 359 402 - -
Blo12g01115 522 CDD GAT_GGA_like_plant 187 265 - -
Blo12g01115 522 PANTHER TOM1-LIKE PROTEIN 4 1 521 - -
Blo12g01115 522 Gene3D - 176 273 IPR038425 -
Blo12g01115 522 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Blo12g01115 522 MobiDBLite consensus disorder prediction 270 344 - -
Blo12g01115 522 Pfam GAT domain 195 267 IPR004152 GO:0035091|GO:0043130
Blo12g01115 522 ProSiteProfiles GAT domain profile. 179 267 IPR004152 GO:0035091|GO:0043130
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g01115 Blo18g00229 CCT
Blo12g01115 Blo18g00229 ECH
Blo01g01603 Blo12g01115 BCT
Blo01g01314 Blo12g01115 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01770 Blo-Chr1:57430090 Blo12g01115 Blo-Chr12:28802490 7.73E-103 dispersed
Blo09g00216 Blo-Chr9:9763130 Blo12g01115 Blo-Chr12:28802490 3.42E-35 dispersed
Blo12g00760 Blo-Chr12:25937278 Blo12g01115 Blo-Chr12:28802490 6.76E-101 dispersed
Blo12g01115 Blo-Chr12:28802490 Blo16g00573 Blo-Chr16:23439401 3.32E-29 dispersed
Blo18g00073 Blo-Chr18:586970 Blo12g01115 Blo-Chr12:28802490 1.74E-08 dispersed
Blo01g01314 Blo-Chr1:50287278 Blo12g01115 Blo-Chr12:28802490 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01115 - - rcu:8270940 633.254