Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g01312 ATGGATGAATGTTCCATGAAAAGGTCTAGTGAGAGACTGGCAGCTAGAAAAATGCCTGGTGTAGTTCAGAAAGAATCAGACAAGGGAAGATATCAAAATTCTCGGATTTGCCCTCGTCTCAGTTGTAGCAGTAGATTAGCTTCTTCAGAGAGTAGTAAGTCTGCAAAGACTCCTTCAAATGGGAAAGAAATAGTTGGAAGTTCTTCAAGGACGGGTTGTTTTATTGGAAAGTCCAAAAAATCTACGTTTGAGAGTCGGATGAAGCTGCCTTCTCGGTCCGAATCGGAGCCTTCTGAAAATGGTGGCATTAAGGATGAACATGAAGGTTCTGACCTTATCCCTCCTGGAAAAATTCAAAAAGGGCTTCATGCTCATTCTAAAAGCTGCAATTCCATCAATGGTGGAAGCTCTAGCGAAGCACCAAACTCGAGATCTTCTGTTTCGGTGGGAGCTAAAAATCTTAGCTCAGCCTCTAGTGCCGGTCCCAATCATTTTGGTCTGAGAAAGTTAAAAGGCAACCTCAATCCATTGGGCTGTTGTTCATCTAATAAAAATCACCGTGGAATGAAGGATATTGGTAAAAATTCGAATTCTGAAAGAGAAAGTAGCTTTATTTCTAGAGGAAAAACGACCAATGGATCGCAGCCGAGACAGAATATCAACTCCAATCATGGCATATCCATTTCTGATTCGAGAATAACCCGAAATATACCTCCTCGAAGCGAATTGGGTGGTTCATTGGCTAGGACTAGGAACTCAGTCAATGGGAATATAAGAACAAGTCTGTCTATGGAGTCCTCCAGCACGAGCCGCAGAATTCCGCGACGAAATGTCTCCATAAATGGTAATGCATCGACTTCGTCAAACCAATCATCAACCGAGCTGACCTCTCGTCGACCGTTTTCTTACACCCGACCAAGAAATAGCAATGAGAATCTTGCCAGACCCGCCTCTCCTGCCGAACTGGGCACAAACCGGTCATTAACGAATCGGGAAAGCTTGCAAAGTTACAACATCAATGGCATTGCCGAGGTATTGTTGGCACTGGAGAGGATTGAACAAGATGAAGAGCTAACATATGAGCAAGTAATGCTTCTTGAGACTAGTCTCTTCTTAAACGCTGCAAACTTATTTGATCAGCACAGAGGCATGAGACTGGACATTGATGACATGTCCTACGAGGAACTGCTAGCTCTGGAAGAGAGAATGGGAACTGTGAGTACGGCTCTGACCGAAGATGCACTTTCTCGGTGTCTCAAACGAAGCATTTTCCAGTCGAACAACGACGGAGTTCGATGCTGCAGTGACGAAAAAGATGATATCAAATGTTGTATTTGCCAGGAAGAATATGTCAATGGAGATACAGTTGGGAGGTTGGAATGCAAGCATAGGTATCACGAAGAATGCATACAACAATGGCTTCGGCAGAAGAACTGGTGTCCCATCTGTAAAGCATCAGCTGAACACCCTCTCCGGCCATCTTCGTCTTCGCCGTCTTCTTCGTCTTAG 1509 44.33 MDECSMKRSSERLAARKMPGVVQKESDKGRYQNSRICPRLSCSSRLASSESSKSAKTPSNGKEIVGSSSRTGCFIGKSKKSTFESRMKLPSRSESEPSENGGIKDEHEGSDLIPPGKIQKGLHAHSKSCNSINGGSSSEAPNSRSSVSVGAKNLSSASSAGPNHFGLRKLKGNLNPLGCCSSNKNHRGMKDIGKNSNSERESSFISRGKTTNGSQPRQNINSNHGISISDSRITRNIPPRSELGGSLARTRNSVNGNIRTSLSMESSSTSRRIPRRNVSINGNASTSSNQSSTELTSRRPFSYTRPRNSNENLARPASPAELGTNRSLTNRESLQSYNINGIAEVLLALERIEQDEELTYEQVMLLETSLFLNAANLFDQHRGMRLDIDDMSYEELLALEERMGTVSTALTEDALSRCLKRSIFQSNNDGVRCCSDEKDDIKCCICQEEYVNGDTVGRLECKHRYHEECIQQWLRQKNWCPICKASAEHPLRPSSSSPSSSS 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17911667 17913543 - Bma001631.1 Bma01g01312 75829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g01312 502 MobiDBLite consensus disorder prediction 124 162 - -
Bma01g01312 502 CDD RING-H2_TTC3 442 484 - -
Bma01g01312 502 MobiDBLite consensus disorder prediction 81 113 - -
Bma01g01312 502 SMART ring_2 443 483 IPR001841 -
Bma01g01312 502 ProSiteProfiles Zinc finger RING-type profile. 443 484 IPR001841 -
Bma01g01312 502 MobiDBLite consensus disorder prediction 198 236 - -
Bma01g01312 502 Pfam Ring finger domain 442 484 IPR001841 -
Bma01g01312 502 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 488 IPR045191 GO:0061630
Bma01g01312 502 MobiDBLite consensus disorder prediction 181 329 - -
Bma01g01312 502 MobiDBLite consensus disorder prediction 36 78 - -
Bma01g01312 502 SUPERFAMILY RING/U-box 435 489 - -
Bma01g01312 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 490 IPR013083 -
Bma01g01312 502 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 488 - -
Bma01g01312 502 MobiDBLite consensus disorder prediction 246 315 - -
Bma01g01312 502 MobiDBLite consensus disorder prediction 1 162 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02125 Bma01g01312 CCT
Bma01g01312 Bma02g00056 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01312 Bma-Chr1:17911667 Bma01g02125 Bma-Chr1:77736610 1.78E-63 dispersed
Bma01g00659 Bma-Chr1:6000514 Bma01g01312 Bma-Chr1:17911667 8.73E-34 transposed
Bma01g01919 Bma-Chr1:70826452 Bma01g01312 Bma-Chr1:17911667 1.13E-33 transposed
Bma08g00852 Bma-Chr8:46528110 Bma01g01312 Bma-Chr1:17911667 4.27E-12 transposed
Bma10g00486 Bma-Chr10:5721691 Bma01g01312 Bma-Chr1:17911667 2.12E-14 transposed
Bma12g00439 Bma-Chr12:11073626 Bma01g01312 Bma-Chr1:17911667 1.26E-30 transposed
Bma01g01312 Bma-Chr1:17911667 Bma01g02122 Bma-Chr1:77636854 5.56E-87 wgd
Bma01g01312 Bma-Chr1:17911667 Bma02g00056 Bma-Chr2:478451 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g01312 - - jre:109009571 400.979