Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00056 ATGGATGAATATTCTGGAAAAAGGGCTACTGACGGACTCACGGCTAGAAAATCGTCTGGTCTGGTTCTGAAAGATACAGCCAAGTGTGGCTATCAAAGTTCCCAGGATTGTAGTAGGCTCAGTTGTAGTAGCAGATCAACCTCTTCAAAAGCTCCTACAGTGAGCTTTTTGGGGAAAACTAAGTCTACCAAAACTTCTTTGAATGGGAAAGAAATAGTTGGAAGTTCTTCGAGGACGACTTCTACAATTAGAAATTCCAAAAAGTCAATCCTTGAGAGTAGAAGAACACTGACTTCTCAATCTAGATCGGAAGCTCCTGAAAATGGCGGCATTGAGGATGAAAAAGACGGTTCCGACCCTGTCCCTCCCGGAAAAATTCGAAGAGGGCTTTATGCTCATTCTAAAAACCGTGATTTCATGGATGTTGGAAGCTCTAGTCCAGCATCAAACGCAGGATCTTCTGTTTCTACGGGAGCTACAAATTCGATCTCGGTCTCTGGGACTGGTCCAAATTGCTATGGTTTGAGAAACTTAAAATGCAATTCATTATCTGACCATATTCCATCAGGCTGTTCATCAAATAGAAATCACAATGGAACTAAGGGTATTGAGAAGAAGACAAATTCCGAAAGAGAAAGTAGCTCCATTTCTAGAGAAAAGAAGATGAATGGATCACTATCGGATGGACGGAATATCAACTGTGGCCATGGCCTCTCTATTTCTGACTCTAGGAGAACCAGAAGTACAGCACCTCAAACCCAAAATGGCGTGTCGTCAGCGCCGTCTAGGAGTTCAGTCAATGCGAATACTAGAACTAGGCTCTCCGTGGAACCATCGCATGAGTCCTCTGCCATGGGCCGCCCAATGACTCAACGGAACGTATCCATCATTGGAAATGCTCCAAGTTTGTCAGGACAATTCTCGACAGAACCGACTTCTAGGCGACCATTTTCCTCTAGGAGAGTAAGAAATAGTAATGGAAATAGCGTTAGACCTACCAGTCCTGTTGAACTCGGCTCAACTTTGTCTTTGGAAAACTTGCAACATTATGACATTGATGGAGTGGCTGAGGTATTGTTGGCACTTGAGAGGATTGAGCAAGATGAAGAGCTAACATATGAGCAATTAATGCTTCTCGAGACTAGACTATTCTTAAACGGCATAGCCTTCTATGATCAGCATAGAGACATGAGACTGGACATTGATGACATGTCCTATGAGGAACTGCTGGCTCTCGAAGAGAGAATGGGAAATGTCAGCACAGCACTGACAGAGGATGCGTTGTCTCGGTGTCTCACAGGAAGCATTTTCGACTCGAACAATTATGGAGTTAGACGCTGCAGTGGCGATAAAAATGATGAAGAATACGTAAATGGAGATGAAGTTGGTAGATTGGAATGTAAGCATTGGTTTCATGAAGGATGTATACAACAATGGCTGAGGCAGAAGAACTGGTGCCCCATCTGCAAAGCTTCGGCTGAGCTCCCCGGCCGGCCATCTCCACCTTCCTAG 1512 44.38 MDEYSGKRATDGLTARKSSGLVLKDTAKCGYQSSQDCSRLSCSSRSTSSKAPTVSFLGKTKSTKTSLNGKEIVGSSSRTTSTIRNSKKSILESRRTLTSQSRSEAPENGGIEDEKDGSDPVPPGKIRRGLYAHSKNRDFMDVGSSSPASNAGSSVSTGATNSISVSGTGPNCYGLRNLKCNSLSDHIPSGCSSNRNHNGTKGIEKKTNSERESSSISREKKMNGSLSDGRNINCGHGLSISDSRRTRSTAPQTQNGVSSAPSRSSVNANTRTRLSVEPSHESSAMGRPMTQRNVSIIGNAPSLSGQFSTEPTSRRPFSSRRVRNSNGNSVRPTSPVELGSTLSLENLQHYDIDGVAEVLLALERIEQDEELTYEQLMLLETRLFLNGIAFYDQHRDMRLDIDDMSYEELLALEERMGNVSTALTEDALSRCLTGSIFDSNNYGVRRCSGDKNDEEYVNGDEVGRLECKHWFHEGCIQQWLRQKNWCPICKASAELPGRPSPPS 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 478451 480404 - Bma014511.1 Bma02g00056 77306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00056 503 ProSiteProfiles Zinc finger RING-type profile. 447 490 IPR001841 -
Bma02g00056 503 MobiDBLite consensus disorder prediction 199 218 - -
Bma02g00056 503 MobiDBLite consensus disorder prediction 31 106 - -
Bma02g00056 503 MobiDBLite consensus disorder prediction 219 287 - -
Bma02g00056 503 Pfam Ring finger domain 455 490 IPR001841 -
Bma02g00056 503 MobiDBLite consensus disorder prediction 187 287 - -
Bma02g00056 503 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 494 - -
Bma02g00056 503 SUPERFAMILY RING/U-box 454 494 - -
Bma02g00056 503 MobiDBLite consensus disorder prediction 31 166 - -
Bma02g00056 503 MobiDBLite consensus disorder prediction 300 336 - -
Bma02g00056 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 495 IPR013083 -
Bma02g00056 503 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 494 IPR045191 GO:0061630
Bma02g00056 503 MobiDBLite consensus disorder prediction 139 166 - -
Bma02g00056 503 MobiDBLite consensus disorder prediction 107 122 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02125 Bma02g00056 CCT
Bma01g01312 Bma02g00056 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00056 Bma-Chr2:478451 Bma12g00439 Bma-Chr12:11073626 1.64E-26 dispersed
Bma01g01312 Bma-Chr1:17911667 Bma02g00056 Bma-Chr2:478451 0 wgd
Bma01g02122 Bma-Chr1:77636854 Bma02g00056 Bma-Chr2:478451 4.57E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00056 - - jre:109009571 391.734