Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma01g01604 | ATGTCAGGTGGCGGTTGCAGCATAGTTTGGTTCAGAAGAGATCTCAGGGTTGAAGATAACCCAGCTCTCACCGCCGCCGTCAGGGCTGGCGCCATCGTCGTCGCCGTCTTCATCTGGGCGCCGGAGGAAGAAGGTCACTACTATCCTGGCCGAGTCTCGCGGTGGTGGCTCAAACAGAGCTTAGCTCATCTCGATTCTTCGCTTAGAAGCCTCGGCGCTTATCTTGTCACTAAGAGATCCACCAACACCATTTCTACTTTGCTCGATGTTGTTAAAGCCACCGGTGCTTCTCAGCTCTTCTTCAATCACTTATACGATCCTTTGTCGCTTATTCGTGATCATCGAGCAAAGGAGGTTTTATCTGCGCAAGGCATCGGCGTGAGGTCTTACAATGCCGATTTGCTGTACGAGCCGTGGGACGTTAAGGATGTCGATGGCAATCCGTTTACGACGTTTGCCAGGTTCTGGGAAAGATGTCTTAGCATGCCTTGTGATCCAGAGGCACCACTTCTTCCACCTAAGAGAATCATTTCAGGTGATGCATCGAGGTGCCCAAGCGATACGTTGGTATTCGAAGACGAATTGGAGAAGGGAAGCAACGCACTTCTCGCCCGAGCATGGTCTCCTGGATGGAGCAATGCAGATAAGGCTTTGACCACATTCATCAATGGACCGTTGATTGAGTACTCAAAAAACCGTAGGAAGGCGGATAGTGCAACCACCTCGTTTCTGTCTCCTCACTTGCATTTCGGGGAGGTAAGCGTGCGAAAAGTGTTTCATCTCGTTCGAATGAAGCAGGTTTTATGGGCGAATGAAGGAAACGAGGTTGGTGAAGAGAGTGTCAACTTGTTTCTCAAATCTATTGGGCTCAGAGAATACTCAAGATACATGAGTTTCAACCATCCGTACAGCCATGAAAGGCCACTTCTTGGGCACCTTAAATTTTTCCCCTGGGTTGTGGATGAAGGCTATTTTAAGGCATGGAGGCAAGGAAGAACCGGTTATCCATTAGTCGATGCTGGTATGAGGGAATTGTGGGCGACCGGGTGGCTGCACGATCGGATCCGAGTCGTCGTTTCTAGCTTCTTTGTGAAGGTTCTGCAGCTTCCGTGGAGATGGGGAATGAAGTATTTCTGGGATACGCTCTTGGATGCAGATCTCGAGAGCGATGCTCTTGGATGGCAATACATATCTGGCACACTTCCCGACAGTCGGGAATTTGATTGTATCGACAATCCACAGCTCGAGGGTTATAAGTTCGATCCGCACGGAGAATACGTCCGGAGATGGCTTCCTGAACTTTCTAGATTACCAACTGAATGGATCCATCATCCATGGAATGCACCAGAGTCGGTACTCCAAGCTGCTGGGATTGAGCTCGGATCGAACTACCCTCTTCCCATCGTAGGATTGGATGCAGCTAAGGCTCGGTTGGAAGAAGCGCTGTCAGAGATGTGGCAACAAGAAGCAGCTTCAAGAGCTGTGATCGATAATGGAACTGAAGAGGGACTCGGAGACTCATCCGAGTCGATCCCAATTGCATTTCCTCAGGACATAGCCATGGAGGATGAAGACCTTGAGCCTGCTAGGATGAATGCTCATACAATTCGGTGCTTCGAGGATCAGATGGTCCCAAGCATGACGAGTTCGGTGAGGTTAGAAGACGACCATTCTTTGAATTCAATGAACATTCGAAGTACAGCAGAAGATGGTAGGGCAGAAGTACCAACAGATCTAAATCTAAACCAAGAGCCAACCAGAGATGCAAATCGAAGAGTTCTTCCGACTGCTCCGATGAACGCTCGACTTCCATATACTGCAGGTATAGACTTAAGAAGTGGTGCTGAAGACTCCACTGCAGAGTCTTTTTCGAGTAGCGACGGTCGAAGAGAAAGAGATGGAGGTGTGGTTCCGGTTTGGTCTCCACCAAGTTCGAGTTACGGCGAGCAGTTTGTGGTCGACGAAAACGGCATTGGAACAAGCTCTTCGTTCTTGCAGGGACATCAACAGACTCATCAAATAATCAATTGGAGGCGGCTATCTCAAACCGGGCAGACAGACAAAGGCTATCCTGTTCTATTAGCTCTGGTCAGTCAGCAAAACACTAACATGTTCTTCTACTTTCTCCACCAATCTGACTTGACCATTGGTTACTGTCATGTGTATGAAATACCTAACTCATAG | 2184 | 48.81 | MSGGGCSIVWFRRDLRVEDNPALTAAVRAGAIVVAVFIWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGAYLVTKRSTNTISTLLDVVKATGASQLFFNHLYDPLSLIRDHRAKEVLSAQGIGVRSYNADLLYEPWDVKDVDGNPFTTFARFWERCLSMPCDPEAPLLPPKRIISGDASRCPSDTLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRMKQVLWANEGNEVGEESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDSREFDCIDNPQLEGYKFDPHGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDAAKARLEEALSEMWQQEAASRAVIDNGTEEGLGDSSESIPIAFPQDIAMEDEDLEPARMNAHTIRCFEDQMVPSMTSSVRLEDDHSLNSMNIRSTAEDGRAEVPTDLNLNQEPTRDANRRVLPTAPMNARLPYTAGIDLRSGAEDSTAESFSSSDGRRERDGGVVPVWSPPSSSYGEQFVVDENGIGTSSSFLQGHQQTHQIINWRRLSQTGQTDKGYPVLLALVSQQNTNMFFYFLHQSDLTIGYCHVYEIPNS | 727 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 11059657 | 11063571 | + | CmaCh01G016040.1 | Cma01g01604 | 287297 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma01g01604 | 727 | ProSitePatterns | DNA photolyases class 1 signature 2. | 353 | 372 | IPR018394 | - | |
| Cma01g01604 | 727 | Gene3D | - | 135 | 294 | - | - | |
| Cma01g01604 | 727 | PRINTS | DNA photolyase signature | 392 | 406 | IPR002081 | - | |
| Cma01g01604 | 727 | PRINTS | DNA photolyase signature | 333 | 349 | IPR002081 | - | |
| Cma01g01604 | 727 | PRINTS | DNA photolyase signature | 353 | 371 | IPR002081 | - | |
| Cma01g01604 | 727 | ProSiteProfiles | Photolyase/cryptochrome alpha/beta domain profile. | 5 | 135 | IPR006050 | - | |
| Cma01g01604 | 727 | MobiDBLite | consensus disorder prediction | 608 | 644 | - | - | |
| Cma01g01604 | 727 | SUPERFAMILY | Cryptochrome/photolyase FAD-binding domain | 193 | 489 | IPR036134 | - | |
| Cma01g01604 | 727 | Gene3D | HUPs | 8 | 207 | IPR014729 | - | |
| Cma01g01604 | 727 | PANTHER | CRYPTOCHROME | 1 | 606 | IPR002081 | - | |
| Cma01g01604 | 727 | Pfam | FAD binding domain of DNA photolyase | 284 | 482 | IPR005101 | - | |
| Cma01g01604 | 727 | Gene3D | DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 302 | 503 | - | - | |
| Cma01g01604 | 727 | PANTHER | CRYPTOCHROME-1 | 1 | 606 | - | - | |
| Cma01g01604 | 727 | Pfam | Blue/Ultraviolet sensing protein C terminal | 512 | 626 | IPR020978 | - | |
| Cma01g01604 | 727 | ProSitePatterns | DNA photolyases class 1 signature 1. | 333 | 345 | IPR018394 | - | |
| Cma01g01604 | 727 | TIGRFAM | crypt_chrom_pln: cryptochrome, plant family | 6 | 483 | IPR014134 | GO:0009785|GO:0009882 | |
| Cma01g01604 | 727 | Pfam | DNA photolyase | 7 | 162 | IPR006050 | - | |
| Cma01g01604 | 727 | SUPERFAMILY | Cryptochrome/photolyase, N-terminal domain | 7 | 177 | IPR036155 | - | |
| Cma01g01604 | 727 | Coils | Coil | 471 | 491 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma01g01604 | Cma09g00556 | CCT | |
| Cma01g01604 | Cma09g00509 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01604 | Cma-Chr1:11059657 | Cma17g00165 | Cma-Chr17:851311 | 0 | dispersed | |
| Cma01g01604 | Cma-Chr1:11059657 | Cma09g00556 | Cma-Chr9:2529295 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma01g01604 | K12118 | - | csv:101213649 | 1278.46 |