Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00364 ATGATCAAACCATGTGTCCACAAAAGTAAACCAAAAAAAAAAATAATAATAATTAATTTATATTTATTTATATATTTTGGAATCTGCAACTGCCGCTCTGACCCGTCTTTTCCTTTCCTGCCTGCAATTATTCCCCACCCTCTCAGACAGAAAAAAATGGAGTGTTTGGAAGCTAAGGCTTTGAAATCGAGTTTCCACTGGGAATTAGCCATGGAATCTGCTCAACAAGACGCTTTGGTGGAGGAAATTTGGTGTTTGAACGGAGCTAATCTCGTCGCCGGCGAGGAGTTTGAAGTCGACGAGTTTTTTAACTTCTCTAATGGAGATTTTGAACATGGGTCTGCTTTGAGAGTTGAGGAAAATGACGATTATCAAGAGTTTGAGAAAGATTTGGTCTCTGTTTCGTCGGATTCGAACCAGTCCGGCGAGATTCCGGCTGCCGGAGAGGAGGACTCGAAGTCGCTTCTTGCCGTTGAGCTTGCTATTCCGGGCGATGCTCTGGCGGAGCTTGAATGGGTTTCTCATTTCGTCGACGATTCTCGGCTGGGATTTTCCAGCGCCGCCGTGGCTTTCAGCCGCTCCGAGCCGGAAAAGAACCTCGCCGGAGGTGTAATTTCGTGTTTGCCGACGTTTGTTCCGGTCAAACCAAGGACGAAAAGGTCGAGACAAAGTCGGCAAACGAAATCCACCGGTTCTTCTCTGAACCAATCGTCGTCGTCATCCTCCTCCTCGACGTCCTCCGGCGTTTCCTCCGCCTCACAGTGGTTCATCTTCTCCGACGCCGGCGAGAACGTGGACTCTTCAAACGCCGCCGGCGAGCCTCCGAAGAAGCAAAGGAAAAAGTCAATAACATCGTCGCCGACAGCTCTTCAATCCGGTGGTTTGACCGGTCAGATTCCGCGGCGGTGTAGTCATTGTCTGGTTCAGAAGACCCCACAATGGCGAACCGGTCCACACGGGGCCAAAACACTCTGCAACGCTTGTGGGGTCCGGTATAAATCCGGTCGGCTTTTTCCAGAGTATAGACCGGCGTTGAGCCCCACTTTTTGCAGCAATGTTCACTCAAACAGCCATCGAAAAGTGCTCGAAATGAGGAAGATGAAGGAGGTCTCCCAACCGGCAACCGAGTTGACTCCAATGGTCCGGAGTTACTAA 1155 49.78 MIKPCVHKSKPKKKIIIINLYLFIYFGICNCRSDPSFPFLPAIIPHPLRQKKMECLEAKALKSSFHWELAMESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYQEFEKDLVSVSSDSNQSGEIPAAGEEDSKSLLAVELAIPGDALAELEWVSHFVDDSRLGFSSAAVAFSRSEPEKNLAGGVISCLPTFVPVKPRTKRSRQSRQTKSTGSSLNQSSSSSSSSTSSGVSSASQWFIFSDAGENVDSSNAAGEPPKKQRKKSITSSPTALQSGGLTGQIPRRCSHCLVQKTPQWRTGPHGAKTLCNACGVRYKSGRLFPEYRPALSPTFCSNVHSNSHRKVLEMRKMKEVSQPATELTPMVRSY 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1797272 1798853 - CmaCh02G003640.1 Cma02g00364 288115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00364 384 ProSitePatterns GATA-type zinc finger domain. 303 328 IPR000679 GO:0006355|GO:0043565
Cma02g00364 384 PANTHER GATA TRANSCRIPTION FACTOR 54 384 - -
Cma02g00364 384 MobiDBLite consensus disorder prediction 215 249 - -
Cma02g00364 384 PANTHER GATA TRANSCRIPTION FACTOR 54 384 - -
Cma02g00364 384 Gene3D - 296 372 IPR013088 GO:0006355|GO:0008270
Cma02g00364 384 ProSiteProfiles GATA-type zinc finger domain profile. 301 333 IPR000679 GO:0006355|GO:0043565
Cma02g00364 384 MobiDBLite consensus disorder prediction 281 296 - -
Cma02g00364 384 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 298 360 - -
Cma02g00364 384 MobiDBLite consensus disorder prediction 266 296 - -
Cma02g00364 384 SMART GATA_3 297 347 IPR000679 GO:0006355|GO:0043565
Cma02g00364 384 MobiDBLite consensus disorder prediction 225 249 - -
Cma02g00364 384 CDD ZnF_GATA 302 359 IPR000679 GO:0006355|GO:0043565
Cma02g00364 384 Pfam GATA zinc finger 303 336 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00364 Cma20g00811 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00364 Cma-Chr2:1797272 Cma16g00644 Cma-Chr16:3349745 6.26E-60 dispersed
Cma02g00364 Cma-Chr2:1797272 Cma20g00811 Cma-Chr20:3817823 1.35E-160 wgd
Cma02g00364 Cma-Chr2:1797272 Cma03g00704 Cma-Chr3:5744191 5.13E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34430 PF00320 GATA 2.40E-15 CL0167 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00364 - - csv:101205298 502.286