Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00226 ATGACCTCCGACGGCGCCACTTCTGCCACCACTTGCCGGCGGAAGCCGTCCTGGAGGGAGCGGGAGAATAATCGGACCAGAGAACGACGAAGGAGAGCCATCGCGGCTAAGATCTACGCTGGCCTTAGGGCTCAAGGCAACTTCAATTTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCCCTCTGTGCTGATGCTGGTTGGACCGTCGAAGACGACGGAACCACTTATCGGAAGGGATGCAGGCCGCCCCCAATCGATATCGTCGGCAGTTCCAACAGAGCCACCCCCTACACATCCCAAAATCCAAGCCCATTGTCTTCTTCATTTCCTAGTCCTATGGCATCCTATCAAGTCAGTCCCTCCTCCTCCTCCTTCCCGAGCCCGTCCCGTTTGGACGCCAACCATCCATCAAACCTCATTCCATATCTTCGCCAAGCGATTCCCAAATCACTTCCTGGTCTTAGAATCTCAAACAGTGCTCCCGTGACGCCTCCTCTTTCATCCCCTGCCTCAAATTGGGAGGTCACGGCTAAAGAATCCTTGTCCTTGTTGAATTACCCTTTCTTTGCAGTATCCGCCCCAGCTAGCCCGACACGCCCTCAGCTGCTGCATACTCCCGCCACGATCCACGAATGCGATGAGTCTGAATCATCCACCAATGACTCCAATCAATGGGCACTTCTCCGTGCCTGTGCGCCAACTTCTCCCACCTTCAACCTTATGAAACCTGCTGATCAGCATGCTCTGCACGGTGGTTTCATCAAAGAAAATGGAAGAGGAAAAGAATTTGAGTTCTTGGGCTGCAAGGTTAAGCCCTGGGAAGGGGAGAAGATCCATGAAGTTGGATTGGAGGATTTAGAGCTCACACTCGGTAGCTGTAAGGCTCAAAATGATAACAATAAACAAAATCAGAATCCCCCAAACGACGTCGTTGGATACTCATCTCTCAAATTAATCTCCAATCTCCGGTCAATTTGGGGGAAACAGAAACTTCCCGCCGCTAGCACCGCCATGGCTTCCAAAGCTCCCCCCTCCTCTACCGAGAAACAAAGAGACTTCTTCAATCACCTCGAAGCTTACCTCGCAAAGAGAGACGGCGTCGACAAGCTCTTGAAAATCTCCAGGTACGCCACCAAGATCATCCTCTCCTCCTCCGCTCTTCCCGAATCCCTTCCTCTAACGCACCGTCTCAAGAGCTTCGAATCCAGCGTCGGCGTCAGCCGCAAGGCCTTCCGTCTCGGAAAATTCATCCAAGACCTAAACGCCTTGAGAAATTCGCATTTCGAATCTAGCCAACAACTTCTGCTCGCTCTCGTTGCCTATGGCGGAGAGGGATTTTATTACTTTATCGAACAGTTCATTTGGTTGGCTAAATCTGGTTTAATTGACAAACGGCACTCGAATCACTTGCAGAAGATCAGCGCGTGGGCGGAATTAATCGGCTATATCGGGAGTATTTCGTTGAAATTTAGGGATTTGAAACGGATTCTTGAAGACGAGGCGTGTTTGAAAGCGAGTATTGAGATTGCAGTTACCAGAGGGGATAAACATCGAGAAGAGGAAGAGAAGATGAAGAAATTGCAAACGAAAAAGCTGATGAAGAAGCTTTCGATTGTTCAAGATTTTGCCGATGGATTCATGGCGGCGGCGGACATTCGCGATGGGAATGGCCGGCTTTCAGGTCCTCATCTAATTTCTTGGGCTGGGCTTATCTCGGCATTGATTAGCACTCATAAGAACTGGATATCATGCTGA 1761 50.03 MTSDGATSATTCRRKPSWRERENNRTRERRRRAIAAKIYAGLRAQGNFNLPKHCDNNEVLKALCADAGWTVEDDGTTYRKGCRPPPIDIVGSSNRATPYTSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSRLDANHPSNLIPYLRQAIPKSLPGLRISNSAPVTPPLSSPASNWEVTAKESLSLLNYPFFAVSAPASPTRPQLLHTPATIHECDESESSTNDSNQWALLRACAPTSPTFNLMKPADQHALHGGFIKENGRGKEFEFLGCKVKPWEGEKIHEVGLEDLELTLGSCKAQNDNNKQNQNPPNDVVGYSSLKLISNLRSIWGKQKLPAASTAMASKAPPSSTEKQRDFFNHLEAYLAKRDGVDKLLKISRYATKIILSSSALPESLPLTHRLKSFESSVGVSRKAFRLGKFIQDLNALRNSHFESSQQLLLALVAYGGEGFYYFIEQFIWLAKSGLIDKRHSNHLQKISAWAELIGYIGSISLKFRDLKRILEDEACLKASIEIAVTRGDKHREEEEKMKKLQTKKLMKKLSIVQDFADGFMAAADIRDGNGRLSGPHLISWAGLISALISTHKNWISC 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 963953 967163 + CmaCh05G002260.1 Cma05g00226 294344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00226 586 MobiDBLite consensus disorder prediction 14 29 - -
Cma05g00226 586 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 1 298 - -
Cma05g00226 586 Pfam BES1/BZR1 plant transcription factor, N-terminal 13 136 IPR008540 -
Cma05g00226 586 MobiDBLite consensus disorder prediction 93 133 - -
Cma05g00226 586 Pfam Peroxisomal biogenesis factor 11 (PEX11) 357 583 IPR008733 GO:0005779|GO:0016559
Cma05g00226 586 MobiDBLite consensus disorder prediction 1 29 - -
Cma05g00226 586 MobiDBLite consensus disorder prediction 82 133 - -
Cma05g00226 586 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 298 IPR033264 GO:0003700|GO:0006351|GO:0009742
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00226 Cma12g00488 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00226 Cma-Chr5:963953 Cma07g00508 Cma-Chr7:2196728 7.30E-86 dispersed
Cma06g01108 Cma-Chr6:7478953 Cma05g00226 Cma-Chr5:963953 4.08E-07 dispersed
Cma08g00929 Cma-Chr8:5800216 Cma05g00226 Cma-Chr5:963953 1.64E-09 dispersed
Cma12g00489 Cma-Chr12:2541382 Cma05g00226 Cma-Chr5:963953 5.22E-160 transposed
Cma12g00488 Cma-Chr12:2538169 Cma05g00226 Cma-Chr5:963953 6.07E-155 wgd
Cma03g00775 Cma-Chr3:6022602 Cma05g00226 Cma-Chr5:963953 4.53E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35032 PF05648 PEX11 1.80E-44 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00226 K14503 - csv:101219853 471.085