Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g01533 | ATGCTAAGGTTCTTAATATATTTTATTATTTGGTTCAACTTTAAAGAATATGTATGCTTTACCGACTGTAAAGGGGTGAAGACAGGAGAAAGAATCCATCATTTTATTCTTCTTTCAATTCATTCTCTTTTCTTTTACCTCCTTCAATCAGGAAAAGTGAGATCCTTACAAGTTGCCATGACACTATACCGAAGAAACATGGCGTATGACGGCGGTGGATGCAAGAACAATAAAGTTGCCCTGGTTGGGTTGTTGTCTCTGTTTTTGGTTGCCTTGGTTAATGGTGCAAGTGGCGCAGGAGAGGACTCTGGGTCCTCTAATGTTGCCATTAAGACTATATGTGAGCCCACTACTTATCGTGAAACTTGCGAAGAAGCCCTGGTGAAGTCCAATGTTGACTCAAAAGACCCACGTGAGTTGATCAAGGCAGGGTTCCATTTTGCTATTGAGCAGCTCAAAGCGGCAATTGCAAATTCCCCCACTTTGAAACAAGCCGCCACCGACCCCATGGCGAAAGAAGCCATTGATACTTGTGACGAGCTCATAGATTATGCAATTGATGATCTTTTAACTACGTTTGATCAAATCACTGATAGTTTTAGTTTAAATAGGGTGGATAATTATCTTAAGAATCTTAGGATTTGGTTGAGTGGTGCGTTGACATATCAAGAAACTTGTTTGGATGCTTTCGAGAATGTTACTGGCGATACTGGTGAAAAGATGACGAATTTGTTGAAGACGTCAAAAGAAATGACCGCTAATGGACTTGTGATGGTGGGTGAGGTTACATCTCTTGTGAGCTCTTTGTGGAAGGCGCTCGGGCTGCCAGAAACAGGGCGACAACTCCGAGCAAAAGAACTCGATGAAGAAGATGAAGAGGAAGAGCCATCTTGGGTCAATGACAGGCGAGGGCTACTCCAAGCCACTGGTGCCAAGATTAGGGCAAATGTGGTGGTGGCTAAAGACGGAAGTGGAAAGTACAAGACAATAACTCAAGCCCTTCAAGATGTCCCAAGGAAGAGCAATAAAACCTTTGTGATTTATGTCAAGGAAGGAGTTTACCAAGAGCAAGTAATGGTGGACAAAACAATGACCTGGGTCATGATGATTGGAGATGGTCCTACCAAGACCAAGATCACGGCCGGCAAGAACTTCAAGGATGGAACATCCACATTCAAAACTGCTACCTTTGCGGCGGTTGGAACCAACTTCATTGGAAAAGACTTGTGGTTCGAGAACTCTGCTGGGCCTGAGAAACACCAGGCTGTGGCACTCCGAGTTCAATCAGACATGTCAATCTTCTACAATTGTAGAATGGACGGCTATCAAGATACTCTCTACACCCATGCTCATCGTCAATTCTTTCGAGATTGCACCATCACTGGTACCATTGATTTCATCTTTGGCAATGCTGCTGTCATCTTACAAAACTGTAAGATATTTGTGAGGAAGCCAATGGAGAATCAAAAATGCATCGTCACTGCTCAAGGTCGGCTCGAGAGGAAAGAGCCCACTGGTATCGTCCTCCAAAATTGCGCCATCTCTTCTGACCCTGGCTTCTTCCCCGTCCGCCATGTCTTCAAGACCTACCTTGGCCGCCCATGGAAGCAGTATTCAAGAACCATCATCATGCAATGCCAAATTGACGACTTGATCCAACCTGAAGGGTGGCTTCCATGGGAGGGCGATTTTGCTCTCAAGACTTTGTTTTACACAGAATTTGATAACAGAGGACCTGGTGCAGCAAAACAAAATAGAGTTAAGTGGAGGGGAATTAAACAAATCACACCAAAGCATGCCATTGATTTCACCCCTGGGTTGTTTATTCGTGGTAATCCCTGGATTAGGCGCACTGGAGTTCCTTACTATTCGGGCATGGCAACGATCTAA | 1890 | 44.39 | MLRFLIYFIIWFNFKEYVCFTDCKGVKTGERIHHFILLSIHSLFFYLLQSGKVRSLQVAMTLYRRNMAYDGGGCKNNKVALVGLLSLFLVALVNGASGAGEDSGSSNVAIKTICEPTTYRETCEEALVKSNVDSKDPRELIKAGFHFAIEQLKAAIANSPTLKQAATDPMAKEAIDTCDELIDYAIDDLLTTFDQITDSFSLNRVDNYLKNLRIWLSGALTYQETCLDAFENVTGDTGEKMTNLLKTSKEMTANGLVMVGEVTSLVSSLWKALGLPETGRQLRAKELDEEDEEEEPSWVNDRRGLLQATGAKIRANVVVAKDGSGKYKTITQALQDVPRKSNKTFVIYVKEGVYQEQVMVDKTMTWVMMIGDGPTKTKITAGKNFKDGTSTFKTATFAAVGTNFIGKDLWFENSAGPEKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFFRDCTITGTIDFIFGNAAVILQNCKIFVRKPMENQKCIVTAQGRLERKEPTGIVLQNCAISSDPGFFPVRHVFKTYLGRPWKQYSRTIIMQCQIDDLIQPEGWLPWEGDFALKTLFYTEFDNRGPGAAKQNRVKWRGIKQITPKHAIDFTPGLFIRGNPWIRRTGVPYYSGMATI | 629 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 9645268 | 9648291 | - | CmaCh06G015330.1 | Cma06g01533 | 297087 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g01533 | 629 | ProSitePatterns | Pectinesterase signature 2. | 460 | 469 | IPR033131 | - | |
| Cma06g01533 | 629 | Gene3D | - | 310 | 626 | IPR012334 | - | |
| Cma06g01533 | 629 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 109 | 261 | IPR035513 | - | |
| Cma06g01533 | 629 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 105 | 262 | IPR035513 | - | |
| Cma06g01533 | 629 | SMART | PMEI_2 | 105 | 258 | IPR006501 | GO:0004857 | |
| Cma06g01533 | 629 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 84 | 259 | IPR006501 | GO:0004857 | |
| Cma06g01533 | 629 | CDD | PMEI-like_3 | 112 | 264 | - | - | |
| Cma06g01533 | 629 | Pfam | Plant invertase/pectin methylesterase inhibitor | 109 | 256 | IPR006501 | GO:0004857 | |
| Cma06g01533 | 629 | Pfam | Pectinesterase | 316 | 612 | IPR000070 | GO:0030599|GO:0042545 | |
| Cma06g01533 | 629 | PANTHER | PECTINESTERASE | 81 | 627 | - | - | |
| Cma06g01533 | 629 | PANTHER | PECTINESTERASE | 81 | 627 | - | - | |
| Cma06g01533 | 629 | ProSitePatterns | Pectinesterase signature 1. | 341 | 360 | IPR018040 | - | |
| Cma06g01533 | 629 | SUPERFAMILY | Pectin lyase-like | 313 | 625 | IPR011050 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma06g01533 | Cma17g00341 | CCT | |
| Cma06g01533 | Cma08g01239 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g01517 | Cma-Chr6:9589741 | Cma06g01533 | Cma-Chr6:9645268 | 0 | dispersed | |
| Cma06g01518 | Cma-Chr6:9594721 | Cma06g01533 | Cma-Chr6:9645268 | 0 | dispersed | |
| Cma06g01519 | Cma-Chr6:9601235 | Cma06g01533 | Cma-Chr6:9645268 | 0 | dispersed | |
| Cma06g01521 | Cma-Chr6:9604438 | Cma06g01533 | Cma-Chr6:9645268 | 0 | dispersed | |
| Cma06g01528 | Cma-Chr6:9624522 | Cma06g01533 | Cma-Chr6:9645268 | 0 | dispersed | |
| Cma06g01529 | Cma-Chr6:9634771 | Cma06g01533 | Cma-Chr6:9645268 | 0 | dispersed | |
| Cma06g01533 | Cma-Chr6:9645268 | Cma08g00449 | Cma-Chr8:2527124 | 0 | dispersed | |
| Cma06g01531 | Cma-Chr6:9643423 | Cma06g01533 | Cma-Chr6:9645268 | 3.25E-24 | proximal | |
| Cma06g01533 | Cma-Chr6:9645268 | Cma06g01535 | Cma-Chr6:9654615 | 7.11E-125 | proximal | |
| Cma06g01533 | Cma-Chr6:9645268 | Cma06g01536 | Cma-Chr6:9656130 | 4.20E-47 | proximal | |
| Cma06g01533 | Cma-Chr6:9645268 | Cma06g01537 | Cma-Chr6:9656441 | 5.16E-133 | proximal | |
| Cma06g01533 | Cma-Chr6:9645268 | Cma06g01538 | Cma-Chr6:9657268 | 1.51E-58 | proximal | |
| Cma06g01533 | Cma-Chr6:9645268 | Cma06g01539 | Cma-Chr6:9657647 | 1.04E-123 | proximal | |
| Cma06g01532 | Cma-Chr6:9643820 | Cma06g01533 | Cma-Chr6:9645268 | 3.67E-126 | tandem | |
| Cma06g01533 | Cma-Chr6:9645268 | Cma06g01534 | Cma-Chr6:9654218 | 6.08E-45 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g01533 | K01051 | - | csv:101212686 | 802.742 |