Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma08g01239 | ATGTCGAATGGATTTGACGCCGAAGGTGACAACAAGAAAAAGAAAATGGCCTTCGTAGGCGTCTCTTCTCTGTTCCTCGTGGCCATGGTCGTTGCCGTTACCGTTGGCGTTAACAACTCCTCACACAAAGGTGAAGGTCTCGGCGACGGTCATGGTGACGGAGCCGGAGAAATTTCTTCATCGACAAAAGCAATTCAAACTATTTGTCGACCAACCGATTACAAAGAAACATGCGAGAAGAGTTTAATGTCTGAAGGCAGTAACACAACTGACCCTAGAGAGCTTGTGAAAATCGGTTTCAAAGTTTGCATGGACCAACTTAACTCGGCGATTAGAAATTCTACCACGCTTCAAGCATTAGCCAAAGAACCAAGAACCAACCAAGCCCTTCAGAATTGTCGCGAGCTTCTAGAATACGCTATCGACGATATAACCGATTCATTCAACAGAATCGGCACCTTTCAAATGGCCAAACTCGACAAATTCGTCGAGGATTTGTCAATCTGGTTAAGTGGGGCCCTTACTTATGAACAAACATGTTTGGATGGTTTTGAAAACACCACTGGTGATGCCGGTGAACGAATGAAAATGTTTTTAAAGTCAGCTCAAGAAATGACAAGTAACGGTCTTGCAATTGTAACTGAATTGAAGAACATGTTGGGATCGTTGCAAGGATCCAAGGCGGGGCGTCGGTTGTTGGCCGGCGATGAAGTGCCGTCATGGGTTAGCAGCGAAAAGAGGCGGCTGATGCAGCTGCCTAGGTCGGCGATCACACCGAATGTGGTGGTGGCGCAGGACGGAAGTGGAAAATACAAGACGATTAATGAAGCGTTGGTTGATGTGCCGAAGAAGAGCAATATAACCTTTGTGATTTACGTGAAGGCTGGAATTTATAAGGAAACTGTTCTTATTCCTAAGGCTTTGACTCATGTTACAATGTACGGTGATGGCCCGACCAAAACCATCGTGTCTGGTGCTTTGAACTTTGTCGACGGCATTCAAACTTTCAAGACAGCAACATTCGCGGTTGTCGGAGCCAATTTCTTCTGTCGAGACATGGGGTTCGAGAACACTGCTGGCTCGGCGAAACATCAAGCCGTGGCGCTTCGAGTCCAATCTGACAGATCGATTTTCTTCAACTGTCAAATGGACGGCTACCAAGATACTCTCTATGCACAAACCCATCGCCAGTTCTACCGTGATTGCAAAGTCAGCGGCACCATTGACTTTGTTTTTGGCAACTCAGCCGCCGTTTTCCAAAACTGCAATTTGGTCGTCCGTAAGCCACTGGCTAACCAACAATGCATTGTCACGGCTCAAGGCCGGCTCGAGGCCCGCGAACCGACGGGTTTCGTTTTCCAAAAATGCCATTTGATGGGCGACCCGGCTTACTTGCCATTCAAAGCCGTCAACAAAGCCTACTTGGGCCGTCCCTGGAAGCAATATTCACGAACCATTATTATGGGTTCTGAAATCGACGATTTAATTCAGCCTGAGGGATGGCTGCCGTGGATGGGCGATTTTGGGCTGAACTCATTGTTCTACGCCGAGTTTCAGAACAAAGGACCGGGAGCTGACCTGACCAACAGAGTGAAGTGGCAAGGAATTAAAACTCTTACGGCGCAACAGGCCGCGGATTTCACTCCCAAGGTTTTTATCGACGGCGATGCTTGGATTTTGAACACGGGAGTTCCGTACTCTCCTGGAATGATGTGA | 1716 | 47.79 | MSNGFDAEGDNKKKKMAFVGVSSLFLVAMVVAVTVGVNNSSHKGEGLGDGHGDGAGEISSSTKAIQTICRPTDYKETCEKSLMSEGSNTTDPRELVKIGFKVCMDQLNSAIRNSTTLQALAKEPRTNQALQNCRELLEYAIDDITDSFNRIGTFQMAKLDKFVEDLSIWLSGALTYEQTCLDGFENTTGDAGERMKMFLKSAQEMTSNGLAIVTELKNMLGSLQGSKAGRRLLAGDEVPSWVSSEKRRLMQLPRSAITPNVVVAQDGSGKYKTINEALVDVPKKSNITFVIYVKAGIYKETVLIPKALTHVTMYGDGPTKTIVSGALNFVDGIQTFKTATFAVVGANFFCRDMGFENTAGSAKHQAVALRVQSDRSIFFNCQMDGYQDTLYAQTHRQFYRDCKVSGTIDFVFGNSAAVFQNCNLVVRKPLANQQCIVTAQGRLEAREPTGFVFQKCHLMGDPAYLPFKAVNKAYLGRPWKQYSRTIIMGSEIDDLIQPEGWLPWMGDFGLNSLFYAEFQNKGPGADLTNRVKWQGIKTLTAQQAADFTPKVFIDGDAWILNTGVPYSPGMM | 571 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 7592616 | 7594593 | - | CmaCh08G012390.1 | Cma08g01239 | 299934 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma08g01239 | 571 | ProSitePatterns | Pectinesterase signature 2. | 404 | 413 | IPR033131 | - | |
| Cma08g01239 | 571 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 59 | 218 | IPR035513 | - | |
| Cma08g01239 | 571 | SUPERFAMILY | Pectin lyase-like | 255 | 569 | IPR011050 | - | |
| Cma08g01239 | 571 | SMART | PMEI_2 | 60 | 212 | IPR006501 | GO:0004857 | |
| Cma08g01239 | 571 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 63 | 216 | IPR035513 | - | |
| Cma08g01239 | 571 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 61 | 216 | IPR006501 | GO:0004857 | |
| Cma08g01239 | 571 | CDD | PMEI-like_3 | 67 | 216 | - | - | |
| Cma08g01239 | 571 | PANTHER | PECTINESTERASE | 16 | 570 | - | - | |
| Cma08g01239 | 571 | PANTHER | PECTINESTERASE | 16 | 570 | - | - | |
| Cma08g01239 | 571 | Pfam | Pectinesterase | 260 | 556 | IPR000070 | GO:0030599|GO:0042545 | |
| Cma08g01239 | 571 | Pfam | Plant invertase/pectin methylesterase inhibitor | 64 | 212 | IPR006501 | GO:0004857 | |
| Cma08g01239 | 571 | ProSitePatterns | Pectinesterase signature 1. | 285 | 304 | IPR018040 | - | |
| Cma08g01239 | 571 | Gene3D | - | 254 | 570 | IPR012334 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma06g01518 | Cma08g01239 | CCT | |
| Cma06g01533 | Cma08g01239 | CCT | |
| Cma08g01239 | Cma17g00341 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma08g00449 | Cma-Chr8:2527124 | Cma08g01239 | Cma-Chr8:7592616 | 0 | dispersed | |
| Cma13g00489 | Cma-Chr13:5244755 | Cma08g01239 | Cma-Chr8:7592616 | 8.88E-151 | dispersed | |
| Cma14g01220 | Cma-Chr14:9709640 | Cma08g01239 | Cma-Chr8:7592616 | 1.02E-143 | dispersed | |
| Cma04g01887 | Cma-Chr4:9775204 | Cma08g01239 | Cma-Chr8:7592616 | 8.48E-179 | transposed | |
| Cma06g00011 | Cma-Chr6:87802 | Cma08g01239 | Cma-Chr8:7592616 | 5.90E-169 | transposed | |
| Cma10g01133 | Cma-Chr10:7823071 | Cma08g01239 | Cma-Chr8:7592616 | 0 | transposed | |
| Cma11g01192 | Cma-Chr11:7073950 | Cma08g01239 | Cma-Chr8:7592616 | 0 | transposed | |
| Cma17g00341 | Cma-Chr17:1855462 | Cma08g01239 | Cma-Chr8:7592616 | 0 | wgd | |
| Cma06g01539 | Cma-Chr6:9657647 | Cma08g01239 | Cma-Chr8:7592616 | 5.05E-50 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma08g01239 | K01051 | - | csv:101221958 | 870.537 |