Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00341 ATGTCCAACGGATTTGATGCCGAAGGCGACAAAAAGAAGAAGAAAATCGCCGTCATTAGCGTTTCTTCTTTAATCCTCGTCGCTATGGTGGTTGCCGTCACTGTCGGCGTCAACAACGCTCCTCACGAGGATCTCGACGACGGCGGCGGAGGCGGCGACCTTCATGATCACGGTGACGACGGCGGCGACGTTCATGATCACGGTGACTACGGCGGCGGAGGCGGCGACGCTCATGATCACGGTGACGACGGCGAGAAGATTTCGTCATCAACTAAAGCAATCAAAACCATTTGTCAACCAACGGATTACAAAGAAACTTGCGAAGAGAGTTTAATGGTGGAAGCCGGCAACACAACCGACCTGAAAGAACTTGTCAAAGCCGGGTTCAAAATCGCCGTGGAAAAACTTAACGCGGCGATTAGAAATTCCACTACGCTTCAAGAATTAGCTAAAGACCCAAGAGCCAACCAAGCTCTTCAAAATTGCCGCGAGTTATTGGAATACGCCATCGACGATCTCCACGATTCTTACCATAGAATCGGCACCTTCCACGTGTCGAAATTTGAGGAGTTTGTTAACGATTTAAAGATTTGGCTTAGTGCAGCTCTCACTTATGAACAAACTTGTCTTGACGGATTTGAAAACACTACCGGCGATTCCGGAGAGAGAATGAAAGAGTTTTTGAAGTCCGCTCAAGAAATGACTACTAACGGCCTTGGAATTGTCAGTGAATTGTCGAACATTTTGGGTACACTTCACGAGCCGGCAGCGACTGGGCGGCGACTTTTGGACACTGACATGCCGTTGTGGGTTAGCGACGGAAAGCGGCGGCTAATGCAATTGGAGACAGGGGCGATCAAGCCCGACCTGGTGGTGGCTCAAGATGGGAGCGGAAAGTACAAGACAATAAATGAAGCTTTGGTCGATGTCCCAATGAAGAGTAATAAAACGTTTGTGATATATGTCAAAGCGGGAATTTACAAGGAAATTGTTGTTATTCCTAAGCATATGACTCATTTGACCATGTACGGTGACGGACCGACCAAATCTGTGGTTACCGGTAATTTAAATTTTGTCGACGGCATTCAAACTTTCAAGACAGCTACATTCGCTGCTATTGGAGCTAATTTCTTCGTTCGAGACATGGGGTTCGTGAACAGCGCTGGACCGACGAAGCACCAAGCCGTAGCCCTACGTATCCAATCGGATCGAGCCATCATTTACAATTGTCAAATAGATGGGTTCCAAGACACTCTCTACGCCCATGCTAACCGTCAGTTCTATCGAGATTGCACAATCAGTGGCACCATTGATTTCGTGTTTGGCAACTCTGCAGCTATCTTCCAGAACTGCAAGCTAGTGGTTCGTAAGCCATTGGATAATCAGCAATGCATTGTCACGGCTCACGGGCGGCTCAATCGTCGTGAACCGACGGCCTTGATCTTCCAAGGCTGCCACTTCATGGGCGACCCGGCTTACTTGCCGTTCAAGAAAGTGAACAAGGCGTATTTGGGGCGGCCATGGAAGCAATATTCACGAACCATTATAATGGGATCTCAAATCGACGATTTGATCCAACCCGAAGGATGGTTGCCGTGGATGGGCGATTTTGGACTCAATACGTTGTTCTACGCCGAGGTACAGAACAGAGGGCCAGGGGCTGATCAGAGCCACAGAGTAAAGTGGCGAGGAATTAGACATATTACGCCGCAGCACGCCGCGTCTTACACTGCCAGACGATTTATTGACGGCGATGCTTGGATTCCAGTCAGAGGGGTCCCCTACTCTTCTGGAATGATGTAA 1803 48.86 MSNGFDAEGDKKKKKIAVISVSSLILVAMVVAVTVGVNNAPHEDLDDGGGGGDLHDHGDDGGDVHDHGDYGGGGGDAHDHGDDGEKISSSTKAIKTICQPTDYKETCEESLMVEAGNTTDLKELVKAGFKIAVEKLNAAIRNSTTLQELAKDPRANQALQNCRELLEYAIDDLHDSYHRIGTFHVSKFEEFVNDLKIWLSAALTYEQTCLDGFENTTGDSGERMKEFLKSAQEMTTNGLGIVSELSNILGTLHEPAATGRRLLDTDMPLWVSDGKRRLMQLETGAIKPDLVVAQDGSGKYKTINEALVDVPMKSNKTFVIYVKAGIYKEIVVIPKHMTHLTMYGDGPTKSVVTGNLNFVDGIQTFKTATFAAIGANFFVRDMGFVNSAGPTKHQAVALRIQSDRAIIYNCQIDGFQDTLYAHANRQFYRDCTISGTIDFVFGNSAAIFQNCKLVVRKPLDNQQCIVTAHGRLNRREPTALIFQGCHFMGDPAYLPFKKVNKAYLGRPWKQYSRTIIMGSQIDDLIQPEGWLPWMGDFGLNTLFYAEVQNRGPGADQSHRVKWRGIRHITPQHAASYTARRFIDGDAWIPVRGVPYSSGMM 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1855462 1857484 - CmaCh17G003410.1 Cma17g00341 312236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00341 600 Pfam Plant invertase/pectin methylesterase inhibitor 93 240 IPR006501 GO:0004857
Cma17g00341 600 PANTHER PECTINESTERASE 83 599 - -
Cma17g00341 600 Gene3D - 283 599 IPR012334 -
Cma17g00341 600 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Cma17g00341 600 CDD PMEI-like_3 96 247 - -
Cma17g00341 600 ProSitePatterns Pectinesterase signature 1. 314 333 IPR018040 -
Cma17g00341 600 Pfam Pectinesterase 289 585 IPR000070 GO:0030599|GO:0042545
Cma17g00341 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 92 246 IPR035513 -
Cma17g00341 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 88 247 IPR035513 -
Cma17g00341 600 TIGRFAM PME_inhib: pectinesterase inhibitor domain 90 244 IPR006501 GO:0004857
Cma17g00341 600 SMART PMEI_2 89 241 IPR006501 GO:0004857
Cma17g00341 600 PANTHER PECTINESTERASE 83 599 - -
Cma17g00341 600 MobiDBLite consensus disorder prediction 46 87 - -
Cma17g00341 600 MobiDBLite consensus disorder prediction 43 87 - -
Cma17g00341 600 SUPERFAMILY Pectin lyase-like 285 598 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01533 Cma17g00341 CCT
Cma06g01518 Cma17g00341 CCT
Cma08g01239 Cma17g00341 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01192 Cma-Chr11:7073950 Cma17g00341 Cma-Chr17:1855462 0 dispersed
Cma17g00341 Cma-Chr17:1855462 Cma06g01518 Cma-Chr6:9594721 0 dispersed
Cma17g00341 Cma-Chr17:1855462 Cma06g01529 Cma-Chr6:9634771 0 wgd
Cma17g00341 Cma-Chr17:1855462 Cma08g01239 Cma-Chr8:7592616 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00341 K01051 - csv:101221958 920.998