Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00811 ATGGAGTGTTTGGAGGCTAAGGCTTTGAAATCGAGTTTCCACTGGGAATTAGCCATGAAATTTGCTCAACCAGACGATATGGTGGAGGATGATGAGTGTTCGAACGGAGCTGATCTCGTCGCCGGCGAGGATTTTGAGGTCGACGAGTTTTTGAACTTCTCTCATGGAGATTTCGAACATGGGTCTGCTTTGAGAGTTGAAGAAGACGACGATTACGAAGAGTTTGAGAAAAATCGGCTCTCTGTTTCGCCGTATTCGAACCAGTCCGGCGGGTTTCCGACCGCCGGAGAAGAGGGCTCGAAGGCGGTTGTTGCCGTTGAGCTTGCTATTCCGGGCGATGCTTTAGCGGACCTTGAATGGGTTTCTCAATTCGTCGATGATTCTGGCTCGGAATATTCCTGCGCCGCTGTGTCTTTGAACCGCTCCAAACCAGAAAAGAAACTCACCGGAGCTGTAATTTCGTGTTTGCCGACGTCTTTTCCGGTCAAACCGAGGACGAAAAGGCCGAGACAATTTCGTCAAGCAAAATCCAACACTTCTTCTCTCAACCAATCGTCGTCGTCGTCGTCCTTGTCTTCGTCCTCCGGTGTTTCCTCCGCCGCACCTTGGTTCATCTTCTCCGACGCCGGCGAGAACGTGGACTCTTTGAACGTCTCCGGCGAGCCAACGATGAAGCAGAGGAAAAAGTCGTCGTCGGCGGCGGCGGTTTTTCAACCCGTCGGCCCGACCGGTCAGATTCCGCGGCGGTGCAGCCATTGTCTTGTTCAGAGGACCCCACAGTGGCGGACCGGTCCAAACGGGGCCAAAACGCTCTGTAACGCTTGTGGGGTCCGGTATAAATCCGGTCGCCTCTTCCCGGAGTATAGACCGGCGCTGAGTCCCACTTTTTGCAGCGGTATTCACTCGAACAGTCATCGGAAAGTGCTTGAAATGAGGAAGACGAAAGAGGTCCCTGAACCGGCGTCCGATTTGGCCCCAATGGTCCCGAGTTACTAA 996 53.51 MECLEAKALKSSFHWELAMKFAQPDDMVEDDECSNGADLVAGEDFEVDEFLNFSHGDFEHGSALRVEEDDDYEEFEKNRLSVSPYSNQSGGFPTAGEEGSKAVVAVELAIPGDALADLEWVSQFVDDSGSEYSCAAVSLNRSKPEKKLTGAVISCLPTSFPVKPRTKRPRQFRQAKSNTSSLNQSSSSSSLSSSSGVSSAAPWFIFSDAGENVDSLNVSGEPTMKQRKKSSSAAAVFQPVGPTGQIPRRCSHCLVQRTPQWRTGPNGAKTLCNACGVRYKSGRLFPEYRPALSPTFCSGIHSNSHRKVLEMRKTKEVPEPASDLAPMVPSY 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3817823 3819388 - CmaCh20G008110.1 Cma20g00811 316625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00811 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 307 - -
Cma20g00811 331 MobiDBLite consensus disorder prediction 217 238 - -
Cma20g00811 331 PANTHER GATA TRANSCRIPTION FACTOR 2 331 - -
Cma20g00811 331 CDD ZnF_GATA 249 306 IPR000679 GO:0006355|GO:0043565
Cma20g00811 331 Gene3D - 243 317 IPR013088 GO:0006355|GO:0008270
Cma20g00811 331 ProSiteProfiles GATA-type zinc finger domain profile. 248 280 IPR000679 GO:0006355|GO:0043565
Cma20g00811 331 MobiDBLite consensus disorder prediction 173 196 - -
Cma20g00811 331 PIRSF Txn_fac_GATA_plant 6 325 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cma20g00811 331 SMART GATA_3 244 294 IPR000679 GO:0006355|GO:0043565
Cma20g00811 331 ProSitePatterns GATA-type zinc finger domain. 250 275 IPR000679 GO:0006355|GO:0043565
Cma20g00811 331 PANTHER GATA TRANSCRIPTION FACTOR 2 331 - -
Cma20g00811 331 MobiDBLite consensus disorder prediction 162 196 - -
Cma20g00811 331 Pfam GATA zinc finger 250 283 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00704 Cma20g00811 CCT
Cma03g00704 Cma20g00811 ECH
Cma02g00364 Cma20g00811 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00644 Cma-Chr16:3349745 Cma20g00811 Cma-Chr20:3817823 2.36E-52 dispersed
Cma20g00811 Cma-Chr20:3817823 Cma05g00584 Cma-Chr5:2900468 5.66E-42 dispersed
Cma02g00364 Cma-Chr2:1797272 Cma20g00811 Cma-Chr20:3817823 1.35E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37032 PF00320 GATA 7.90E-15 CL0167 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00811 - - cmos:111448191 594.349