Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00511 ATGGCAATGCATCGCTATGAGCCAGCCGACGATGAAGCCCAAACCCATTTGATTTCGCTCGATTCTCTGTTTTGCGAGGAGGAGAAATGGGAGGAGGAGGAGGATGAAGATGAGCTAGAACAGACCCATCAAGCCCATGTTTTTTCTTTGGATGTTTTGGAGGAAGATCTATTTGGGGAAGATGAACGCCTTCTCTCCTTGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCCAGCTTGAACCTCTGTTAATGGATCCTTCTGTCTCTGCTGCTCGTTCTTCGTCTGTGGAGTGGATGCTTAAAGTTAAATCCCATTATGGGTTTTCGTCTCTCACTGCAATTTTGGCCGTTGCTTATTTCGACAGGTTCCTCTCGAGCTTTCATTTTAGAAGTGACAAGCCATGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCGTTGGCGGCTAAAGTGGAGGAGGTTGAAGTTCCTCTGCCACTTGACCTTCAAGTGGAGGATGCGAAATTTGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTTTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTTACTTCATATTCATATCTTGACAACATTGTAAGAAGGCTTGGATTAAAGACCAATCTTCATTTGGAGTTCTTCAAGCGTTCTGAGAATCTCCTCCTTTCTCTTCTCTCAGATTCAAGATTTGTGGGTTATCTTCCATCTGTCTTAGCAACTGCAACAATGATGAACATTATAGAACAGATTGAACCCCATAAGTCAATGGAGCACCAAGATCATCTTCTGGGTGTTCTTAAAATGAGCAAGGACAAAGTGCAAGGCTGTTACAATCTTGTAGTGGAGCATTCAAAGGCATGTAGCAATGGCTTATATCATTCCATCAATCCCCACAAGCGGAAGTACGAACATCATCAAGCTCCTGATAGCCCAAATGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCATGGGCATTGAGAGCAGCAGCATCAGTTTGTTCTTCACCTGAACCATCTTTCAAGAAGAACAAAACCGAAGAGCCAAGAATGTTATATCATTCTCTGAACAGGAGGGTCTGTTTGGACATTGTTGGCAGCCCTTCTTAG 1140 44.04 MAMHRYEPADDEAQTHLISLDSLFCEEEKWEEEEDEDELEQTHQAHVFSLDVLEEDLFGEDERLLSLLSKETEQLKQSNLQLEPLLMDPSVSAARSSSVEWMLKVKSHYGFSSLTAILAVAYFDRFLSSFHFRSDKPWMNQLVAVTCLSLAAKVEEVEVPLPLDLQVEDAKFVFEAKTIQRMELLVLSTLQWRMHLVTSYSYLDNIVRRLGLKTNLHLEFFKRSENLLLSLLSDSRFVGYLPSVLATATMMNIIEQIEPHKSMEHQDHLLGVLKMSKDKVQGCYNLVVEHSKACSNGLYHSINPHKRKYEHHQAPDSPNGVIDAGFSSDSSNDSWALRAAASVCSSPEPSFKKNKTEEPRMLYHSLNRRVCLDIVGSPS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2537126 2538960 - CmoCh04G005110.1 Cmo04g00511 379486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00511 379 Gene3D - 90 195 - -
Cmo04g00511 379 Pfam Cyclin, C-terminal domain 197 313 IPR004367 -
Cmo04g00511 379 SUPERFAMILY Cyclin-like 61 195 IPR036915 -
Cmo04g00511 379 SMART cyclin_7 100 188 IPR013763 -
Cmo04g00511 379 SMART cyclin_7 201 289 IPR013763 -
Cmo04g00511 379 SMART Cyclin_C_2 197 333 IPR004367 -
Cmo04g00511 379 CDD CYCLIN 101 187 IPR013763 -
Cmo04g00511 379 Pfam Cyclin, N-terminal domain 91 194 IPR006671 -
Cmo04g00511 379 ProSitePatterns Cyclins signature. 95 126 IPR006671 -
Cmo04g00511 379 PANTHER CYCLINS 13 360 IPR039361 -
Cmo04g00511 379 PANTHER CYCLIN-D3-2 13 360 - -
Cmo04g00511 379 Gene3D - 196 285 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00511 Cmo11g01386 CCT
Cmo04g00511 Cmo19g00602 CCT
Cmo04g00511 Cmo11g01386 ECH
Cmo04g00511 Cmo19g00602 ECH
Cmo04g00511 Cmo16g00370 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00511 Cmo-Chr4:2537126 Cmo12g00510 Cmo-Chr12:3144150 3.98E-87 dispersed
Cmo01g01869 Cmo-Chr1:13549712 Cmo04g00511 Cmo-Chr4:2537126 1.54E-73 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo04g00511 Cmo-Chr4:2537126 7.26E-82 wgd
Cmo16g00370 Cmo-Chr16:1697863 Cmo04g00511 Cmo-Chr4:2537126 0 wgd
Cmo19g00602 Cmo-Chr19:6691342 Cmo04g00511 Cmo-Chr4:2537126 1.16E-83 wgd
Cmo04g00511 Cmo-Chr4:2537126 Cmo05g00163 Cmo-Chr5:696188 7.06E-94 wgd
Cmo04g00511 Cmo-Chr4:2537126 Cmo07g00695 Cmo-Chr7:3141146 3.09E-87 wgd
Cmo04g00511 Cmo-Chr4:2537126 Cmo09g00254 Cmo-Chr9:1141404 1.33E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00511 K14505 - csv:101221213 590.497