Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00794 ATGGATCAGTTCAATCTTTTGAATTGCTCTCTATTTTTCCTACTGTTCTTCATTTTTCTCAAGTTGTTTAGAGCAAAAAAAGTGAACTTACCTCCATCACCACCGAAGCTACCAATACTTGGAAACCTTCATCAGCTGGGCAGGTATCCCCATCGATCGCTGCAAGAACTCTCCAAAAAGTATGGTCCTCTCATGTTTCTGCGACTGGGATTGATTCCAACTCTTGTGGTTTCCTCAGCTGATATTGTCAGAGAGATCTTTAAGAATCATGATATCAGTTTTTCTAACAGGCCCAAATCAACCGCTGCCAATTTGTTCTTCTATGGATACAAAGATGTGGGGTTTTCTCCATATGGGGAATACTGGAGAGGATTAAAAAAGATTTGCACTCTTGAACTTCTAAGTCAGAGAAGAGTGCATGAATTTCAGTATGTGAGGGAAGAAGAAGTTGAAATCCTGGTGAATAAGGTACATAAAGCAAGTTCTTCAGGTTTATCTGTAAATCTTAGTGAGTTGATTACCTCAACCTCAAACAACATAGTTTCAAGATGCATATTTGGAGAGAAATTTGAAGATGAAAATGGAAAGAGCAGATTTGGTGAACTAACAAGAAGGATGGCTAAATTAGTTGTGGCTTTTAGCGTGGGAGATTTTTACCCTGCTTTTGGATGGATTGACAATATCACAGGCTTAATTGGGCAATTGAAAGAAACATCTCGAGCTCTAGATACTTTTCTTGAACAATTGATTGAAGAGCACAAGACAAAGAAGAATGGCGATTTTCAAGGCGACAGAGAAGATTTTGTGGATATTCTTCTTCAAGTTCAGCAGAAGGATGATCTTGGTTTCGAATTCACTCAAGAAAGTTTAAAATCAGTGTTAGAGGATATGTTCATAGCTGGAACGGATACGACGGCATCAGTATTGGAATGGGCGATTGCAGAGCTAGCAAGAAATCCAACAATAATGAAGAAAGCACAACAAGAAATCAGAGAAGTGGTGGGCAAAAAATCAAAGATAGATAGCGATGATATCGTTAAAATGGAATACCTTAAAAGTGTTATCAAAGAATCACTTAGGGTTCATCCACCTGCTCCTCTGTTATTACCTCGAGAAACATCTGAAATGGTGAAGCTGGGAGGATACTGTATTCCATCAAAAACCAGAGTGTTCTTCAATGTTTGGGCGATTCAAAGGGACCCAAGAATCTGGAAGAATCCAGAGGATTTCATCCCGGAGCGATTTGTGAACAACCCAGTTGATTTCAAAGGACAAGAGTGCCATTGCCTCCCATTTGGTGGCGGGAGAAGAAGCTGTCCAGGGATGAATTTCGCTTTTGCATCAATCGAATATGTGTTGGCTAACCTTCTACACTCCTTTGATTGGAAGCTGCCTGATGACAGTATGATGGCTAAAGACTTGGACATGAGTGAAGATATGGGGCTCGCTCTCATCAAGAAGCATCCCCTTGTTCTTAAGCCAGTAACATGTTCAACTTAA 1500 40.07 MDQFNLLNCSLFFLLFFIFLKLFRAKKVNLPPSPPKLPILGNLHQLGRYPHRSLQELSKKYGPLMFLRLGLIPTLVVSSADIVREIFKNHDISFSNRPKSTAANLFFYGYKDVGFSPYGEYWRGLKKICTLELLSQRRVHEFQYVREEEVEILVNKVHKASSSGLSVNLSELITSTSNNIVSRCIFGEKFEDENGKSRFGELTRRMAKLVVAFSVGDFYPAFGWIDNITGLIGQLKETSRALDTFLEQLIEEHKTKKNGDFQGDREDFVDILLQVQQKDDLGFEFTQESLKSVLEDMFIAGTDTTASVLEWAIAELARNPTIMKKAQQEIREVVGKKSKIDSDDIVKMEYLKSVIKESLRVHPPAPLLLPRETSEMVKLGGYCIPSKTRVFFNVWAIQRDPRIWKNPEDFIPERFVNNPVDFKGQECHCLPFGGGRRSCPGMNFAFASIEYVLANLLHSFDWKLPDDSMMAKDLDMSEDMGLALIKKHPLVLKPVTCST 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7543201 7544953 - CmoCh13G007940.1 Cmo13g00794 394849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00794 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
Cmo13g00794 499 PRINTS P450 superfamily signature 439 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PANTHER CYTOCHROME P450 71B11-RELATED 6 496 - -
Cmo13g00794 499 Pfam Cytochrome P450 31 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 Gene3D Cytochrome P450 20 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 SUPERFAMILY Cytochrome P450 31 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g00794 499 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 6 496 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00536 Cmo13g00794 CCT
Cmo10g00092 Cmo13g00794 CCT
Cmo07g00285 Cmo13g00794 CCT
Cmo13g00794 Cmo18g00165 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00794 Cmo-Chr13:7543201 Cmo18g00169 Cmo-Chr18:1173597 0 dispersed
Cmo13g00794 Cmo-Chr13:7543201 Cmo13g00796 Cmo-Chr13:7545859 6.37E-167 proximal
Cmo10g00091 Cmo-Chr10:399381 Cmo13g00794 Cmo-Chr13:7543201 8.43E-155 wgd
Cmo11g00066 Cmo-Chr11:310428 Cmo13g00794 Cmo-Chr13:7543201 1.61E-133 wgd
Cmo13g00794 Cmo-Chr13:7543201 Cmo18g00162 Cmo-Chr18:1148717 6.17E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00794 K20617 - csv:101206414 837.025