Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01600 ATGGCTGAGAGCAGGAGATATGTTCCCATTCAGCATTTAGATCTAGTACAAATACTACAAGAAGCACAAAATAGGTGGCTTCGGCCAGCTGAAATATGTGAAATTCTTCGAAATTACCAAAAGTTTCAATTAGCACCGGATCCTCCAGTTCAGCCTCCAGCTGGATCCTTGTTCCTTTTTGATCGGAAAGCACTTAGATATTTTCGTAAAGATGGTCATAAATGGAGGAAGAAGAAAGATGGGAAAACTGTCAAAGAAGCCCATGAAAAGTTGAAGAGTGGAAGTGTGGATGTTCTGCATTGTTACTATGCACATGGTGAGGACAATGACAACTTCCAGCGAAGAAGTTATTGGATGCTGGATGAGCAATTAGAGCATATTGTCCTTGTGCATTACAGAGAAGTAAATGAGGGTTACAGGTCTGGCATATCTCGAGTTTCAGTTGATCCAGGGTCATTGGCTGAAGGTTGTCAAGGTGGTTCAACACCCATCTTTATGCAGGAAACTTCACTTGTTGGCTCAGTTCATACTTCAAGTCCATTAAGTCCTATGCAAACAGTGCGTTCAGAAAATGGGGGTGTGGATTCTAGTGCTAGGAATGACTCTGGAATCTCTTCTGATGTTCATCATGTGTTTAAATCCAGCATGCTGCCTGCATCTTTGCCTGCAGGTGATGTTTCAGGATCGTCTGATTTATGTGGACAAGAAATCGTGATTATTCAATCTGCCATAACTGATTCAATTACACATAAGTTAATAGATGCTAGATTGGCTTCTAGTGGCTTAGTAAAAAATATGGTAAATAGTGGGCATGGCTTGATTGCTGATGAAGAAGTACCTGCCGCAAAAGCAGTTTCTCAGAGAATTGTTCAGGTGGTAGACGACTCGTTTGTTCAGGTAGAAAAGACGTCCAAATATGATTTGAACCATGAAGGTTTTGGAGAACTCAAAAAACTTGACAGTTTTGGCAGATGGATGGATAAGGAAATTGGAAGAGATTGTGATGATTCTTTGATGACTTTGGACTCTGGTAATTACTGGTGTGCACTGGATGCTGGAAATGATGAGAAGGAAGTATCCAGTTTATCGCATCACATGCAGCTGGATATCGATTCACTGGGGCCTTCACTTTCCCAAGATCAGTTATTCAGTATTTCCGATTTTTCCCCAGATTGGGCATATTCTGGAAATGTAACAAAGGTCCTAATAGTTGGCTCGTTTTTGGGAAGCAAAAAACTTCCTGTAGAAACGCAGTGGGGATGCATGTTTGGGGAAGTTGAGGTTTCTGCAGAAGTTCTGTCAAACAGTGTACTTCGATGCCAAACTCCTCTGCATGCTCCAGGGCGTATTCCCTTCTATGTGACATGCTGTAATAGGCTAGCCTGCAGTGAGGTGAGAGAGTTTGAGTTTCGTGAAAAGCTACCAACCCTCTCTGTACCTAATGCTATCAAGTGTGCATCAGAAGATGAATTACGGTTTCAAATGCGTCTGACAAGGCTGTTGAATTTATGTTTAGAGGAAAAGTGGTTGGATTGCTCTATTAAAAACTGTGAGAAATGCAAAATCATAGGTTTGATGAAGTCATCCAGAAGTGATATTGCAAAATGGAGAATGATGGAAGGGATTTCTATTCCATTAATAAGTGATGGAATGAACCCTAGGGATTTTATGATCCAAACTTTGCTGGTGGACAAACTTTGTGAGTGGCTAGCATGCAAGGTTCATGAAGGAACTATGGGAACGCATGTTTTGGATGAAGAGGGCCTAGGCGTCATACATTTGGCAGCTGCACTTGGCTATGCATGGACCATAGGACCGATAATCGCTTCTGGGGTCAGTCCGAACTTCAGAGATTCGAAGGGAAGGACAGCTCTTCACTGGGCGTCTTACTTTGGGAGGGAAGAAACCGTCGCTACACTGGTTAGGTTAGGTGTTTCTCCTGGTGCCGTGGATGATCCAACTTCAGGATTTCCAGGAGGACAAACTGCTGCTGATTTGGCATCAAGTCGAGGGCATAAGGGAATTGCTGGATATTTGGCTGAAGCTGATCTTATAGCTCATTTACGTTCTTTGACTGATGGTGAAAATCTTAAGGACAACGTCAAAGAAAATGTTAACGTTGATGAAACTATTCAGACTGCAGATGTCGTATCATCGCAGTTGGCGGAAGACGAACTCCTTTCCCTCAAGGGTTCTCTCGCTGCTGTCAGGAAGTCTGTTCACGCTGCTGCCTTAATTCATGCTGCTTTCCGTGCTCGTTCATTTCGTCATAAACAATTAATGGGAAGTGACAAGGAGATGATACATGAAGAATCAGTTGACCTAGTGGCTCTCGGAATTTTAAACAAGGCTGAAAAAATTCACTATGAGGATTATCTCCACGTTGCAGCTGTGAGGATTCAACAAAATTATCGTGGCTGGAAGGGAAGAAAAGAGTTTTTGAAGATAAGAAACCGAATTGTAAAAATCCAGGCTCATGTGAGAGGATATCAAGTTCGTAAACTGTATAGAAAGGTCATATGGACAGTTAGCATTGTAGAAAAGGCAATTCTACGCTGGAGGCGGAAAAGAGTTGGTCTGCGAGGGTTCAAAGCCGAAGGGGCAACTGGAGAAGTTGCTTCCTCGCATTCACAGGTGGAGAAAAGTGATGACTATGAGTTTCTACGAATTGGGCGCCAGCTTAAATATGCTGATGTTGAAAAGGCGCTATCCAGAGTCAAGTCCATGGCTCGTTCTCCAGAGGCTCGCCATCAGTATATGAGATTAGTAACAAAGTTTCACATTTTTAAGATTAATGATGAAGAACCCAGTGGCTCAAATGAAGATGGAAGTTCCCAAGAAATCCAGAAGGAAGAGCAGAATTTGGCTTAA 2871 42.56 MAESRRYVPIQHLDLVQILQEAQNRWLRPAEICEILRNYQKFQLAPDPPVQPPAGSLFLFDRKALRYFRKDGHKWRKKKDGKTVKEAHEKLKSGSVDVLHCYYAHGEDNDNFQRRSYWMLDEQLEHIVLVHYREVNEGYRSGISRVSVDPGSLAEGCQGGSTPIFMQETSLVGSVHTSSPLSPMQTVRSENGGVDSSARNDSGISSDVHHVFKSSMLPASLPAGDVSGSSDLCGQEIVIIQSAITDSITHKLIDARLASSGLVKNMVNSGHGLIADEEVPAAKAVSQRIVQVVDDSFVQVEKTSKYDLNHEGFGELKKLDSFGRWMDKEIGRDCDDSLMTLDSGNYWCALDAGNDEKEVSSLSHHMQLDIDSLGPSLSQDQLFSISDFSPDWAYSGNVTKVLIVGSFLGSKKLPVETQWGCMFGEVEVSAEVLSNSVLRCQTPLHAPGRIPFYVTCCNRLACSEVREFEFREKLPTLSVPNAIKCASEDELRFQMRLTRLLNLCLEEKWLDCSIKNCEKCKIIGLMKSSRSDIAKWRMMEGISIPLISDGMNPRDFMIQTLLVDKLCEWLACKVHEGTMGTHVLDEEGLGVIHLAAALGYAWTIGPIIASGVSPNFRDSKGRTALHWASYFGREETVATLVRLGVSPGAVDDPTSGFPGGQTAADLASSRGHKGIAGYLAEADLIAHLRSLTDGENLKDNVKENVNVDETIQTADVVSSQLAEDELLSLKGSLAAVRKSVHAAALIHAAFRARSFRHKQLMGSDKEMIHEESVDLVALGILNKAEKIHYEDYLHVAAVRIQQNYRGWKGRKEFLKIRNRIVKIQAHVRGYQVRKLYRKVIWTVSIVEKAILRWRRKRVGLRGFKAEGATGEVASSHSQVEKSDDYEFLRIGRQLKYADVEKALSRVKSMARSPEARHQYMRLVTKFHIFKINDEEPSGSNEDGSSQEIQKEEQNLA 956
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12669516 12679349 + CmoCh14G016000.1 Cmo14g01600 396866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01600 956 MobiDBLite consensus disorder prediction 938 956 - -
Cmo14g01600 956 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cmo14g01600 956 ProSiteProfiles IQ motif profile. 793 822 IPR000048 GO:0005515
Cmo14g01600 956 Pfam IQ calmodulin-binding motif 795 813 IPR000048 GO:0005515
Cmo14g01600 956 Pfam IQ calmodulin-binding motif 819 837 IPR000048 GO:0005515
Cmo14g01600 956 MobiDBLite consensus disorder prediction 933 956 - -
Cmo14g01600 956 ProSiteProfiles Ankyrin repeat profile. 620 652 IPR002110 GO:0005515
Cmo14g01600 956 Pfam Ankyrin repeats (many copies) 621 679 IPR002110 GO:0005515
Cmo14g01600 956 ProSiteProfiles Ankyrin repeat region circular profile. 620 652 - -
Cmo14g01600 956 ProSiteProfiles IQ motif profile. 816 844 IPR000048 GO:0005515
Cmo14g01600 956 MobiDBLite consensus disorder prediction 176 200 - -
Cmo14g01600 956 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cmo14g01600 956 Pfam IPT/TIG domain 384 463 IPR002909 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01236 Cmo14g01600 CCT
Cmo14g01600 Cmo17g00349 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01236 Cmo-Chr8:7820141 Cmo14g01600 Cmo-Chr14:12669516 2.37E-144 dispersed
Cmo11g01484 Cmo-Chr11:10488400 Cmo14g01600 Cmo-Chr14:12669516 1.63E-61 dispersed
Cmo14g01600 Cmo-Chr14:12669516 Cmo16g00771 Cmo-Chr16:3866459 1.93E-56 dispersed
Cmo14g01600 Cmo-Chr14:12669516 Cmo19g00274 Cmo-Chr19:2003464 2.10E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11037 PF03859 CG-1 4.40E-49 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01600 K21596 - csv:101219268 1515.36