Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo16g00370 | ATGGCAATACATCGGTATGAACAAGCTGATGATGAAGGCCAAACCCATTTGTTTCCGCTAGATTCTTTGTTCTGTGAGGAGAAATGGGGGGAGGAGGAGGAAGATAAAGCTGAGGTAGAACATACCCATCAGACCCATCTTTTTTCTTTGGGATTTTTGGAGGAAGATCTCTCTGGGGAAGATGAACGGCTTCTCTCCATGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCGAGCTTGAAGTTCTGTTGAAGGATCCTTCTGTCTCTGCTGCTCGTTCTTCAGCTGTGGAGTGGATGCTCAAAGTCCAATCCCATTATGGGTTCTCAACTCTCACTGCCATTTTGGCCGTTGCTTATTTCGACAGGTTCCTCTTGAGCCTCCATTTTAAGAGTGACAAGCCGTGGATGAGCCAGCTTGTGGCTGTCACTTGCCTCTCCTTGGCGAGTAAAGTGGAGGAGATTGAAGTTCCACTTCTGCTGGACCTTCAAGTAGAGGATGCCAAATATGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTGACTCCATATTCTTTTCTTGATCACATTGTAAGGAGGCTTGGGTTAAAGTCCAATCTTCACTTAGAGTTCTTCAGGCGTTCTGAGCATCTTCTCATCTCTCAACTCTCAGATTCAAGATTTGTTGGTTATCTTCCATCTATCTTGGCAACTGCAACAATGATGGGAGTGATAGATCAGCTTGAGCCCCATATGTCATTGGAGCGCCGAGATCAGCTTCTGGGTGTCCTCAAAATTGACAAGGAGAAAGTGCAATGCTGTTACAATCTTGTCAAGGAGCATTCTAAGGCCTATGGCAATGGCAATGGCATTTATCATCCCAACACCCCCCACAAGCGCAAGCATGAACAGCAAGCTCCTGATAGCCCAAGTGGTGTAATCGATGCTGGTTTCACTTCAGACAGCTCCGATGATTCTTGGGCTTTGAAAGCAGCATCAGTCTGTTCATCACCTGAACCTTCTTTCAAGAAGAGCAAAACCGAAGAGCCAAAGATGAAGTTTCATTCTCTTAACAGGCCATTTCTGGACATCGTTGGCAGCCCTTCTTGA | 1137 | 45.82 | MAIHRYEQADDEGQTHLFPLDSLFCEEKWGEEEEDKAEVEHTHQTHLFSLGFLEEDLSGEDERLLSMLSKETEQLKQSNLELEVLLKDPSVSAARSSAVEWMLKVQSHYGFSTLTAILAVAYFDRFLLSLHFKSDKPWMSQLVAVTCLSLASKVEEIEVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVRRLGLKSNLHLEFFRRSEHLLISQLSDSRFVGYLPSILATATMMGVIDQLEPHMSLERRDQLLGVLKIDKEKVQCCYNLVKEHSKAYGNGNGIYHPNTPHKRKHEQQAPDSPSGVIDAGFTSDSSDDSWALKAASVCSSPEPSFKKSKTEEPKMKFHSLNRPFLDIVGSPS | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 1697863 | 1699603 | - | CmoCh16G003700.1 | Cmo16g00370 | 399405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo16g00370 | 378 | PANTHER | CYCLIN-D3-2 | 14 | 361 | - | - | |
| Cmo16g00370 | 378 | Gene3D | - | 77 | 195 | - | - | |
| Cmo16g00370 | 378 | SMART | cyclin_7 | 100 | 188 | IPR013763 | - | |
| Cmo16g00370 | 378 | Coils | Coil | 68 | 88 | - | - | |
| Cmo16g00370 | 378 | SMART | Cyclin_C_2 | 197 | 316 | IPR004367 | - | |
| Cmo16g00370 | 378 | PANTHER | CYCLINS | 14 | 361 | IPR039361 | - | |
| Cmo16g00370 | 378 | SUPERFAMILY | Cyclin-like | 61 | 195 | IPR036915 | - | |
| Cmo16g00370 | 378 | MobiDBLite | consensus disorder prediction | 296 | 333 | - | - | |
| Cmo16g00370 | 378 | Gene3D | - | 66 | 285 | - | - | |
| Cmo16g00370 | 378 | Pfam | Cyclin, N-terminal domain | 75 | 194 | IPR006671 | - | |
| Cmo16g00370 | 378 | CDD | CYCLIN | 95 | 187 | IPR013763 | - | |
| Cmo16g00370 | 378 | Pfam | Cyclin, C-terminal domain | 197 | 296 | IPR004367 | - | |
| Cmo16g00370 | 378 | ProSitePatterns | Cyclins signature. | 95 | 126 | IPR006671 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo16g00370 | Cmo19g00602 | CCT | |
| Cmo11g01386 | Cmo16g00370 | CCT | |
| Cmo16g00370 | Cmo19g00602 | ECH | |
| Cmo11g01386 | Cmo16g00370 | ECH | |
| Cmo04g00511 | Cmo16g00370 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo12g00510 | Cmo-Chr12:3144150 | Cmo16g00370 | Cmo-Chr16:1697863 | 5.99E-100 | dispersed | |
| Cmo16g00370 | Cmo-Chr16:1697863 | Cmo03g00875 | Cmo-Chr3:6824498 | 1.20E-49 | dispersed | |
| Cmo01g01869 | Cmo-Chr1:13549712 | Cmo16g00370 | Cmo-Chr16:1697863 | 3.52E-85 | wgd | |
| Cmo11g01386 | Cmo-Chr11:9696714 | Cmo16g00370 | Cmo-Chr16:1697863 | 1.45E-89 | wgd | |
| Cmo16g00370 | Cmo-Chr16:1697863 | Cmo19g00602 | Cmo-Chr19:6691342 | 8.40E-91 | wgd | |
| Cmo16g00370 | Cmo-Chr16:1697863 | Cmo04g00511 | Cmo-Chr4:2537126 | 0 | wgd | |
| Cmo16g00370 | Cmo-Chr16:1697863 | Cmo07g00695 | Cmo-Chr7:3141146 | 7.37E-84 | wgd | |
| Cmo16g00370 | Cmo-Chr16:1697863 | Cmo09g00254 | Cmo-Chr9:1141404 | 1.25E-89 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo16g00370 | K14505 | - | csv:101221213 | 645.195 |