Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00349 ATGTCTCTTTCCATGAAAGATGATGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCCATGCAATACTATGTAACTACAAATATTTTGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGATCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCTCATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTTGATAACCCAACCTTTGTTCGTCGATGTTATTGGCTCCTTGATAAGTCTCTTGAACACATTGTCCTTGTTCATTACCGCGAAACAAAAGAGTGGCAGAGTTCTCCATCCACGTCGATGAATTCAAATTCTGGTTCTGTCTCTAACCCATCAGCTCATTGGCTTTTATCGGAAGAACTAGATTCCAGGGCTACTAATGTCTATTCTGTTGGTGGAAATGAATTGTCAGAGCCTAGTGACACTACAACAGTCATGGTTCATGAACAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGTGACGAACGAGCCTCTCAAACCTGCTATGCCTAAAGAAGATAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAGTGTGGCCAACAAGATCTTCGGGGTGATAACTTCATTTAATAATCCAGTTGAGTCAACTGGGAGTGCCAACAGCATAGGAAGTGTGAATATGTCATTAATGGGTGGTCAAACGAATTTGAATGTTGAGAGTAGGGAATCCATTCCAATTAATTTGTTGGACAATTTGTTAAACAATGGATTGCAAAGTCAGGATAGCTTAGGACAATGGATAAATGAAGTCATCACTGACTCGCCTGGTTCAGTCATTGATCCTGCTATTGAGCCGTCCATTTCATCTGTTCACAATTCCTATTGTGATTCGACATTATATCACCATCAATCTTCGGTGGAGCAAATTTTTAACATAACTGAGGTCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACAAAGATTGTAATCATTGGATATTTTTCTGATGAGTACGTACATCTAGCGAAGTCCAATATATCTGTTGTTTGTGGTGATACTAGTATTAATGCTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTAGAACCACATTCACCGGGACTTGTACATTTATACCTGAGCTTAGATGGTCACAAACCTATTAGTCAAGTCCTGAATTTTGAGTATCGTGCACCACTTTTACAAGTGCCTGAAGTTACTTCAGAACAGATCCTCAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGATGTTCTCTACATCCAAGAGCTTGAGCATCATGTCAACTAAATTGTCACCCACTGCCCTGAACGACGCCAAGAAACTAGCTGTCAAAACTTCTGGCATTTCTGATGGTTGGATTTATTTGTTAAAATCAGTTACAGAAAATAAAACTCCAATTCCACAAGCAAGAGAGGGTGTTCTTGAGATGATATTGAGAAGCAGGTTGAGGGACTGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGTCTGGTCTGGTTTATCTATAAACTTTCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGGATGGTAGCTGCTCTTTTATCTGTGGGGGCGAAGCCAAGCTTGATCACTGATCCCACATCAAAGAACCCTCTGGGATATACAGCAGCAGATCTTGCATCTATGAATGGTTTTAATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCGCATTTTGAAGACATGAGCTTGGCTGGAAATGTTAGTGGCTCATTGGAAACTAGTACAATACCTGATACCACGAACTTTGATAGCGTCAGTGAGGAGCAGATGTATATGAAAGAAACGTTAGCAGCTTATCGGACAGCAGCTGATGCAGCAGCACGCATACAAGCAGCATTCCGTGAGCATTCTTTAAAGCAAAGGACTGACGCAATTGAACTCTCCACCCCTGAAGCTGAAGCACGTGGTATTATTGCGGCCATGAAAATTCAACATGCCTTCCGCAACTTTGAAACACGAAAAAAAATGGCAGCTGCTGCTCATATTCAATACAGATTCCGCACGTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGAAGACAGTATCGCAAGATCGTTTGGTCGGTAGGAATTGTTGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGACTTCAAGTTGCACCAGCTGAAGTGACAGAAGATCAGGAAACTGGCATGGAAGAGGACTTCTACCGCGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTATTCGGGTTCAGGCTATGTTCCGATCAAAGAAAGTACAAGAGGAGTATCGTCGGATGAAGTTAACCCATGCTGAAGCAGCGTTGGAATACGAAGAGCTTTCACATCCTGATATGAAAATGAATGGCTGA 2745 41.82 MSLSMKDDVQGSLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEIHAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKSLEHIVLVHYRETKEWQSSPSTSMNSNSGSVSNPSAHWLLSEELDSRATNVYSVGGNELSEPSDTTTVMVHEQRLHEINTLEWDELLVTNEPLKPAMPKEDKLSCFDQQNQVPISVANKIFGVITSFNNPVESTGSANSIGSVNMSLMGGQTNLNVESRESIPINLLDNLLNNGLQSQDSLGQWINEVITDSPGSVIDPAIEPSISSVHNSYCDSTLYHHQSSVEQIFNITEVSPAWAFSTEKTKIVIIGYFSDEYVHLAKSNISVVCGDTSINADFVQPGVYRCLVEPHSPGLVHLYLSLDGHKPISQVLNFEYRAPLLQVPEVTSEQILKWEEFQVQMRLAHLMFSTSKSLSIMSTKLSPTALNDAKKLAVKTSGISDGWIYLLKSVTENKTPIPQAREGVLEMILRSRLRDWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHLFVWSGLSINFRDKSGWTALHWAAYYGRERMVAALLSVGAKPSLITDPTSKNPLGYTAADLASMNGFNGLAAYLSEKALVSHFEDMSLAGNVSGSLETSTIPDTTNFDSVSEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTDAIELSTPEAEARGIIAAMKIQHAFRNFETRKKMAAAAHIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGIVEKAILRWRLKRKGFRGLQVAPAEVTEDQETGMEEDFYRVSQKQAEERVERAVIRVQAMFRSKKVQEEYRRMKLTHAEAALEYEELSHPDMKMNG 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2121689 2132160 + CmoCh17G003490.1 Cmo17g00349 400732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00349 914 ProSiteProfiles IQ motif profile. 869 897 IPR000048 GO:0005515
Cmo17g00349 914 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cmo17g00349 914 SUPERFAMILY Ankyrin repeat 564 664 IPR036770 -
Cmo17g00349 914 Gene3D - 528 665 IPR036770 -
Cmo17g00349 914 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515
Cmo17g00349 914 Pfam IPT/TIG domain 366 451 IPR002909 -
Cmo17g00349 914 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Cmo17g00349 914 ProSiteProfiles Ankyrin repeat region circular profile. 602 627 - -
Cmo17g00349 914 Gene3D Immunoglobulins 358 455 IPR013783 -
Cmo17g00349 914 SMART ANK_2a 602 631 IPR002110 GO:0005515
Cmo17g00349 914 SMART ANK_2a 641 670 IPR002110 GO:0005515
Cmo17g00349 914 ProSiteProfiles IQ motif profile. 790 814 IPR000048 GO:0005515
Cmo17g00349 914 Pfam IQ calmodulin-binding motif 792 811 IPR000048 GO:0005515
Cmo17g00349 914 Pfam Ankyrin repeats (3 copies) 564 630 IPR002110 GO:0005515
Cmo17g00349 914 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 908 - -
Cmo17g00349 914 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 908 - -
Cmo17g00349 914 SMART iq_5 766 788 IPR000048 GO:0005515
Cmo17g00349 914 SMART iq_5 867 889 IPR000048 GO:0005515
Cmo17g00349 914 SMART iq_5 789 811 IPR000048 GO:0005515
Cmo17g00349 914 SMART iq_5 713 735 IPR000048 GO:0005515
Cmo17g00349 914 ProSiteProfiles IQ motif profile. 767 794 IPR000048 GO:0005515
Cmo17g00349 914 SUPERFAMILY E set domains 365 452 IPR014756 -
Cmo17g00349 914 Gene3D - 766 814 - -
Cmo17g00349 914 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01600 Cmo17g00349 CCT
Cmo08g01236 Cmo17g00349 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00771 Cmo-Chr16:3866459 Cmo17g00349 Cmo-Chr17:2121689 8.76E-18 dispersed
Cmo17g00349 Cmo-Chr17:2121689 Cmo19g00274 Cmo-Chr19:2003464 2.53E-40 dispersed
Cmo17g00349 Cmo-Chr17:2121689 Cmo08g01236 Cmo-Chr8:7820141 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11377 PF03859 CG-1 2.30E-45 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00349 K21596 - csv:101211298 1489.55