Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00602 ATGGCTCTGCACCCAAATAAACACAGAATCAAACTCCACCATAGCTCGCTCTTCTTCCTGGACTTCCTCTACTGCACTGAAGAACAGCAGCTTGAAACAGAGGATAACAATGGCGGCGGCTCCAATGACTTCCCTCTTTGGGAAGAGACGACCCATTTCCTTGTTTGTGAAGACGAGGAGCTCGATCGTTTGCTGTCCAAAGAACAGGACCAGAATCTTCAATACGGTGCTGTTCTGGAGAACTTGGTTCAAACAGAGGGTGCTCTGTTTTTGGCTAGAACAGAGGCCGTCGAATGGTTGCTTAAAGTTAATGCCTTTTATGGCTTCTCCACTCTCACAGCTCTCTTAGCCATTAATTACCTCGACAGAGTCCTCACCGGCCGCCATTTTCAAAGAGATAAGCCATGGATGCTTCAGCTTCTTGCCGTAACTTGCATTTCTTTAGCTGCCAAAGTCGAAGAAGTTCGTGTCCCTGTTCTTCAAGATCTCCAGGTGGAAGATTCTAAGTTCATTTTCGAAGCGAAAACGATACAGAGAATGGAGCTTTTAGTGCTCAGTGCTCTTCAATGGAAGATGCACGCAGTGACCCCTGTTTCATTTCTTGGCATTATAACAAAAGGGCTTGGATTAAAGAAGAATCAGCACTTTCAGAAAGAGTTTCTGAGACGCTTTGAGCGTATTCTCCTCTCTCTCGTCACTGATTCAAGATCGGTGGGGTTTCTTCCTTCTGTAATGGCGGTATCAGCAATGGTGAGCGTTGTTGAAGAGATGGGGAGCTGTAAGCCATTGGAGGAGTTTCAGGATCAGATTCTTAATGCCCTCAAAATAAACAAGGGAAGAGTGAAGGAGTGCTGCAAGGTGATAATGGAGGTATCAAAAGGGCAGGCCAAAGCAAAGGTATCAGGGAAGAGGAAGCATGTGGAGGAGGAGGAAGCAGAAGCAGAATCAGAAGGTGTAGCAGGGAGCCCAAATGGAGTAATAGAGGCCAATTTCAGCTGTGGAAGCTCCAACCATTCGTGGGGCATGGGGTCGCCTCTGTCACCCCACACGCCTTCTTCTTCCAAAAGAATCAGACCCACTCCATGA 1086 47.15 MALHPNKHRIKLHHSSLFFLDFLYCTEEQQLETEDNNGGGSNDFPLWEETTHFLVCEDEELDRLLSKEQDQNLQYGAVLENLVQTEGALFLARTEAVEWLLKVNAFYGFSTLTALLAINYLDRVLTGRHFQRDKPWMLQLLAVTCISLAAKVEEVRVPVLQDLQVEDSKFIFEAKTIQRMELLVLSALQWKMHAVTPVSFLGIITKGLGLKKNQHFQKEFLRRFERILLSLVTDSRSVGFLPSVMAVSAMVSVVEEMGSCKPLEEFQDQILNALKINKGRVKECCKVIMEVSKGQAKAKVSGKRKHVEEEEAEAESEGVAGSPNGVIEANFSCGSSNHSWGMGSPLSPHTPSSSKRIRPTP 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6691342 6693804 - CmoCh19G006020.1 Cmo19g00602 403762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00602 361 PANTHER CYCLIN D3.1 PROTEIN 50 340 - -
Cmo19g00602 361 Gene3D - 194 286 - -
Cmo19g00602 361 PANTHER CYCLINS 50 340 IPR039361 -
Cmo19g00602 361 CDD CYCLIN 93 185 IPR013763 -
Cmo19g00602 361 MobiDBLite consensus disorder prediction 302 323 - -
Cmo19g00602 361 ProSitePatterns Cyclins signature. 93 124 IPR006671 -
Cmo19g00602 361 Gene3D - 83 193 - -
Cmo19g00602 361 SMART Cyclin_C_2 195 325 IPR004367 -
Cmo19g00602 361 Coils Coil 297 317 - -
Cmo19g00602 361 MobiDBLite consensus disorder prediction 338 361 - -
Cmo19g00602 361 SUPERFAMILY Cyclin-like 53 193 IPR036915 -
Cmo19g00602 361 Pfam Cyclin, N-terminal domain 91 192 IPR006671 -
Cmo19g00602 361 Pfam Cyclin, C-terminal domain 195 309 IPR004367 -
Cmo19g00602 361 SMART cyclin_7 98 186 IPR013763 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g00370 Cmo19g00602 CCT
Cmo04g00511 Cmo19g00602 CCT
Cmo04g00511 Cmo19g00602 ECH
Cmo16g00370 Cmo19g00602 ECH
Cmo11g01386 Cmo19g00602 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00254 Cmo-Chr9:1141404 Cmo19g00602 Cmo-Chr19:6691342 4.23E-72 dispersed
Cmo19g00602 Cmo-Chr19:6691342 Cmo05g00163 Cmo-Chr5:696188 9.34E-76 dispersed
Cmo01g01869 Cmo-Chr1:13549712 Cmo19g00602 Cmo-Chr19:6691342 2.30E-70 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo19g00602 Cmo-Chr19:6691342 1.30E-153 wgd
Cmo12g00510 Cmo-Chr12:3144150 Cmo19g00602 Cmo-Chr19:6691342 8.31E-80 wgd
Cmo16g00370 Cmo-Chr16:1697863 Cmo19g00602 Cmo-Chr19:6691342 8.40E-91 wgd
Cmo19g00602 Cmo-Chr19:6691342 Cmo04g00511 Cmo-Chr4:2537126 1.16E-83 wgd
Cmo19g00602 Cmo-Chr19:6691342 Cmo07g00695 Cmo-Chr7:3141146 3.51E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00602 K14505 - csv:101222066 468.388