Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00713 ATGGAGGAAAAAGAGGGTGTTGATTTCGGATTTGCATTAAAAGTGAGCCAAGCTCCAGATAGCTTCGGGATGATGGATTCGAGACCTGAAAATACAAGCACGGACAGCGAGCCACCTCCTCCGCCTCCGCCGCCGGCGACGGCGACGGTGGAAGCAGCTCTGACGCTGGCAGGTACAGATGGAAAGAAGAAAAGAGGGAGGCCGAGAAAGTACGGACCCGATGGGACTGTAGTGCCAACATTGTCGCCAATGCCGATTTCATCATCGATTCCGCTGACGGGAGAGTTTCCGGGATGGAAACGGGGAAGGGGGAGGTCAGTAGAATCGCTCAAGAAGTCGCGGAAGTACGATTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGGTCGATTTGAGATACTTTCGTTATCTGGATCATATATGCCTTCCAAGATTGGTGGAACAAAGAGCCGATCCGGAGGGATGAGTGTCTCTTTGGCTTGCCCAGATGGCCGAGTAATGGGTGGAGGACTTTCCGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGCAGTTTCCAACCACCAGGCCACCAACAGGAGAATAAACCAAAGAAGAGCAGGATGGAACCTACATCAAATGCAATTTCACCTCCTCCCGCCATTAAACCCATAGGAGATAAAGCAGATTCTTTAGACCCAAATCCAGCTTTTACAACTTCACCAGTCAACGAAAAACCACCTTCTCCAGAAGAATCAAGAGTTGTCCTCAACCATTCAAACCATGAGCGGTATGAGCTCATTGATTCTGTGAAGGTATGA 855 49.94 MEEKEGVDFGFALKVSQAPDSFGMMDSRPENTSTDSEPPPPPPPPATATVEAALTLAGTDGKKKRGRPRKYGPDGTVVPTLSPMPISSSIPLTGEFPGWKRGRGRSVESLKKSRKYDYEIPGNKVAFFAGADFTPHVITVNIGEGRFEILSLSGSYMPSKIGGTKSRSGGMSVSLACPDGRVMGGGLSGMLIAAGPVQVVVGSFQPPGHQQENKPKKSRMEPTSNAISPPPAIKPIGDKADSLDPNPAFTTSPVNEKPPSPEESRVVLNHSNHERYELIDSVKV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4376541 4382154 - Cp4.1LG05g07180.1 Cpe05g00713 469918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00713 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 217 - -
Cpe05g00713 284 MobiDBLite consensus disorder prediction 1 94 - -
Cpe05g00713 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 144 236 - -
Cpe05g00713 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 144 - -
Cpe05g00713 284 ProSiteProfiles PPC domain profile profile. 86 225 IPR005175 -
Cpe05g00713 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 144 236 IPR039605 GO:0003680
Cpe05g00713 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 144 IPR039605 GO:0003680
Cpe05g00713 284 CDD DUF296 124 204 IPR005175 -
Cpe05g00713 284 Gene3D - 123 221 - -
Cpe05g00713 284 MobiDBLite consensus disorder prediction 34 48 - -
Cpe05g00713 284 MobiDBLite consensus disorder prediction 202 272 - -
Cpe05g00713 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 205 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00713 Cpe13g00070 CCT
Cpe05g00713 Cpe08g00855 CCT
Cpe05g00713 Cpe09g00137 CCT
Cpe05g00713 Cpe09g00137 ECH
Cpe05g00713 Cpe13g00070 ECH
Cpe05g00713 Cpe08g00855 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00433 Cpe-Chr5:2472532 Cpe05g00713 Cpe-Chr5:4376541 2.20E-18 dispersed
Cpe05g00713 Cpe-Chr5:4376541 Cpe08g00488 Cpe-Chr8:3132250 4.78E-36 dispersed
Cpe13g00201 Cpe-Chr13:1547397 Cpe05g00713 Cpe-Chr5:4376541 4.88E-16 dispersed
Cpe13g00070 Cpe-Chr13:546126 Cpe05g00713 Cpe-Chr5:4376541 3.17E-134 wgd
Cpe05g00281 Cpe-Chr5:1584860 Cpe05g00713 Cpe-Chr5:4376541 1.14E-19 wgd
Cpe05g00713 Cpe-Chr5:4376541 Cpe09g00137 Cpe-Chr9:808107 1.69E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00713 - - csv:101211908 375.17