Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00093 ATGGACGGTCGAGATCATCATCGTTTTGGTTTAGTGGCGCATGCCCCTCCTCCTGGTTACTTCATACGTTTGAACAATACTGGATCAAAAGACGATTTATATCTAAGTAAAAGGGATAGAATGCGCAGGTGGCTTTGTTGTGCTTGTCAAGTTGAAGAACCCTACCCATCAGCGGAAAGTGAGCACCTAAAAAGCCCAGGAAGTTATGGAGATGGTGGTCACCAAAAGGTCTCAAAAGAGCCAGCTTCTCACAAATCTGAAGCACCAAAAGCTCCACCTCCCATAGATGTTCCAGCGTTGTCTCTGGAAGAATTGAAAGAAAAGACTGACAACTTCGGGTCCAAGGCATTGATTGGTGAAGGGTCTTACGGTCGAGTTTATTATGCTAGATTAAGCGATGGGAAAACTGTGGCAGTAAAGAAGCTGGATGTTTCCTCCGAGCCTGACTCGAGTGTCGACTTTTTGACTCAGGTTTCTACAGTCTCAAGGTTGAAACATGAAAATTTTGTTGAGTTGCACGGATACTGCGTTGAAGGAAATCTCCGTGTTCTTGCATATGAGTTTGCAACTATGGGTTCTCTACATGACGTATTGCACGGTAGAAAGGGAGTGCAAGGGGCACAGCCTGGTCCAGTGCTCGATTGGATGCAACGTGTGAGAATCGCTGTCGATGCAGCTAGAGGATTGGAGTACTTGCATGAGAAGGTTCAACCTTCTATCATACATAGAGATGTTAGATCCAGCAATGTGCTTCTTTTTGAAGAGTACAAAACAAAGATTGCAGACTTTAACCTTTCTAACCAAGCTCCGGACATGGCTGCACGACTTCATTCTACTCGAGTTTTAGGAACTTTTGGCTACCATGCTCCAGAGTATGCTATGACAGGACAATTGACACAAAAGAGCGATGTCTACAGCTTTGGAGTCGTTCTACTCGAGCTTTTGACTGGGAGGAAACCCGTTGATCACACCATGCCTCGCGGGCAGCAGAGTCTTGTTACTTGGGCTACTCCAAGGCTAAGTGAAGACAAAGTTAAACAATGTGTTGATCCAAGGCTGAAGGGTGAATATCCACCTAAAGGAGTCGCCAAGCTGGCTGCTGTGGCAGCACTGTGTGTGCAATATGAAGCCGAGTTCAGGCCGAACATGAGCATTGTCGTCAAGGCTCTCCAGCCGCTTCTAAAGCCACCTACGCCTATGCCTGCATCGTCTCCTGAACCTTGA 1224 46.57 MDGRDHHRFGLVAHAPPPGYFIRLNNTGSKDDLYLSKRDRMRRWLCCACQVEEPYPSAESEHLKSPGSYGDGGHQKVSKEPASHKSEAPKAPPPIDVPALSLEELKEKTDNFGSKALIGEGSYGRVYYARLSDGKTVAVKKLDVSSEPDSSVDFLTQVSTVSRLKHENFVELHGYCVEGNLRVLAYEFATMGSLHDVLHGRKGVQGAQPGPVLDWMQRVRIAVDAARGLEYLHEKVQPSIIHRDVRSSNVLLFEEYKTKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPRLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKPPTPMPASSPEP 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 579297 582882 + Cp4.1LG08g05990.1 Cpe08g00093 473059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00093 407 Gene3D Transferase(Phosphotransferase) domain 1 190 398 - -
Cpe08g00093 407 MobiDBLite consensus disorder prediction 57 97 - -
Cpe08g00093 407 ProSiteProfiles Protein kinase domain profile. 112 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00093 407 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 26 403 - -
Cpe08g00093 407 ProSitePatterns Tyrosine protein kinases specific active-site signature. 240 252 IPR008266 GO:0004672|GO:0006468
Cpe08g00093 407 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Cpe08g00093 407 Pfam Protein tyrosine and serine/threonine kinase 117 390 IPR001245 GO:0004672|GO:0006468
Cpe08g00093 407 SMART tyrkin_6 112 390 IPR020635 GO:0004713|GO:0006468
Cpe08g00093 407 Gene3D Phosphorylase Kinase; domain 1 84 188 - -
Cpe08g00093 407 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 26 403 - -
Cpe08g00093 407 SUPERFAMILY Protein kinase-like (PK-like) 96 401 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00093 Cpe17g00994 CCT
Cpe03g01253 Cpe08g00093 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00093 Cpe-Chr8:579297 Cpe17g00994 Cpe-Chr17:7541379 0 dispersed
Cpe03g01253 Cpe-Chr3:10153402 Cpe08g00093 Cpe-Chr8:579297 6.92E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62537 PF07714 PK_Tyr_Ser-Thr 3.90E-46 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00093 K13436 - csv:101215403 734.947