Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00855 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACCTCAGCCACAATCTACTCCACCCAATAGAATGATGGGAAATGCTTCTTATTCCACCAATTTTCCCAACAACAACAACAATGCTTCCCCATTGATCAACCCCAATTCCACCGCTGCTCAGATGATGTCATCCGCATCGCGATTTCCCTTCAACTCCATGATGGGTTCTGCTTCTAAGCCTTCGGACTCGCCTAATGCCGGTTCTTATGACGGATCGCAGTCCGAATTGCGTGGTGGTGGCTTCAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCGAGGAAGTATTCGCCTGATGGCAACATCGCTTTGGGTTTATCGCCAACCCCCGTCACTTCTTCCGCCGCTCCCGGTGATTCTGCTGGCATGCACTCGGCGGATCCTCGCCCGAAGAAGAACAGGGGACGGCCGCCGGGTACTGGGAAGAAGCAGATGGATGCTTTGGGAACTGGCGGTGTTGGCTTTACCCCTCATGTCATTCTGGTGAAGCCCGGTGAGGGCCGATATGAAATCATCTCTCTATCAGGCAACTTCTTGATTTCTGACAGTAATGGCAATCGAAATCGAACTGGTCGCTTAAGCGTGTCTCTAGCAAGTGCAGATGGACAAGTCCTTGGTGGAATTACGGACATGTTAACAGCAGCATCTACAGTTCAGGTTATAGTGGGTAGCTTTCTTGTGGATGGGAAAAAGCTGGACTCAAGTACACAGAAATCTGGGCCATCTTCTACATCACCCAATATGTTAAACTTCAGTGCACCTGCGGCGGCAACAGGCTGCCCCTCTGAAGGTGCATCAAATAATTCATCAGATGACAATGATGGTAGCCCTTTAAGCCGGGCGCCTGGAATCTACACCAATGCCAACCAACCAATTCATAATATGCAGATGTATCAATTGTGGGGTAGTCGAAATCAATAA 960 49.58 MDSRERSMPSVHQPQPQSTPPNRMMGNASYSTNFPNNNNNASPLINPNSTAAQMMSSASRFPFNSMMGSASKPSDSPNAGSYDGSQSELRGGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPVTSSAAPGDSAGMHSADPRPKKNRGRPPGTGKKQMDALGTGGVGFTPHVILVKPGEGRYEIISLSGNFLISDSNGNRNRTGRLSVSLASADGQVLGGITDMLTAASTVQVIVGSFLVDGKKLDSSTQKSGPSSTSPNMLNFSAPAAATGCPSEGASNNSSDDNDGSPLSRAPGIYTNANQPIHNMQMYQLWGSRNQ 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6762323 6770942 - Cp4.1LG08g08550.1 Cpe08g00855 473821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00855 319 Gene3D - 162 253 - -
Cpe08g00855 319 MobiDBLite consensus disorder prediction 1 163 - -
Cpe08g00855 319 MobiDBLite consensus disorder prediction 244 301 - -
Cpe08g00855 319 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 238 IPR005175 -
Cpe08g00855 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 82 179 IPR039605 GO:0003680
Cpe08g00855 319 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 239 - -
Cpe08g00855 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 179 315 IPR039605 GO:0003680
Cpe08g00855 319 SMART AT_hook_2 100 112 IPR017956 GO:0003677
Cpe08g00855 319 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Cpe08g00855 319 MobiDBLite consensus disorder prediction 244 265 - -
Cpe08g00855 319 MobiDBLite consensus disorder prediction 274 301 - -
Cpe08g00855 319 MobiDBLite consensus disorder prediction 8 85 - -
Cpe08g00855 319 CDD DUF296 179 238 IPR005175 -
Cpe08g00855 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 179 315 - -
Cpe08g00855 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 82 179 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00713 Cpe08g00855 CCT
Cpe05g00713 Cpe08g00855 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00855 Cpe-Chr8:6762323 Cpe13g00070 Cpe-Chr13:546126 1.26E-28 dispersed
Cpe05g00433 Cpe-Chr5:2472532 Cpe08g00855 Cpe-Chr8:6762323 2.69E-21 transposed
Cpe14g00956 Cpe-Chr14:8067717 Cpe08g00855 Cpe-Chr8:6762323 1.53E-152 wgd
Cpe15g00219 Cpe-Chr15:1895199 Cpe08g00855 Cpe-Chr8:6762323 1.88E-62 wgd
Cpe05g00182 Cpe-Chr5:955937 Cpe08g00855 Cpe-Chr8:6762323 2.34E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00855 - - cmax:111498434 568.54