Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g289 ATGGGTTCCAAGCTTTTTCAATCATTCATCCTACACTCCCCCATCACCACCTTCTTCTTCATCTTCATCGCTATTCCTATGTGCTTCTGCGTTGATAACCAACAATATGAGGAGTGCACAAGTAGTCTGTACGAGTGCGGCGACATGAAAGGCATAGGGTATCCTTTCTGGGGAGATGGTCGACCTAAATTCTGTGGGCAACAAGGGTTCGAGCTCAAGTGCCAGAATGATGATTACCCTCTTATAGATATTGGTTCTTTGGAATTCCGAGTACTCAATATCAGTAATTCCACTTATGCTATGAGAATAGCCCGAAAGGATTTCTGGGATCAAACTTGTCCTAAAGAATTCCAATCCACGACTCTCAATTATACGTTGTTTGATTATGCTGGTACCGATCGAAACCTCACCTTATTTTACGGTTGCCCCGATGACGTGTTGTCCCAACTCCCGGCTACCTGGAATATTAGTAATAATTTTACATGCTCAGTTGAAGATATAAATGATACCACTGCTTTCTACGCGGATGAAGCGTTTCTGGGGCTTGATCAGCACCTTGCAATCCTAAGGACTTGCAAAATCAACGTCACGCTTCCCGTTCTAGGAGCCGCTATTGATGAACTCAATGCCAATAGGACAGGGGGCGAATTTAGTAACGGAGAGAGACTGGAAAAGGCTATGAATATGGGATTTGATGTGGATTATAGCGTAGTCAGAGGGTTGTGTGTGCACTGTAATACGACCGGTGGAATATGCGGATCATCCAGCACGTCTTCATTTAGCTGCCTTTGCCGTGATAAATCTTATCCATATTCGTGTCAAAAATCAGAAGCCAAGCCAACTCCATTGAAATTGTCTTCAAATGCTCCCCTCCAACTCCCCACTTTTCTTCATCTTCTCTGTTTTCCTCTGTTCTCTCTCTCCATTCCTCTTCAAATGGATGCCCAGAACATCTTCATATGGAAAAGTACCTTCTGTATAATTGTAGTCATTATCATCTTCACCAGCTTTGTTATTGAAACCCTATCTGCTGATCCAAAGTTTGAGGCCTGCAAGCCTCACAATTGTGGGACAGGTCCAAATGTAAGCTACCCCTTTTGGATTCCTAAAGAACAAGAATCCTATTGTGGTTTCCCAAATTTCTCAATCACTTGCAATGATGAAAAACCAGTGCTCACTATTTCTGATGATTATTATGTCATTAGAGAGATCTTTTACACCAACCACTCGTTTCTCATGTCTAATTCTGCTGTCTATGATGGTGATTCATGCCCAACTCCTCTGCATAACTTTAGTCTTGATAGGACTCCATTCAATTACAGTCCTTCTCATTATGATCTCTTGTTGTTCTACAACTGCACTTCTGTTCCTGTTGAGACCTTAACAATTCCAATTGATTGCATGAGCAATGCTACTCTTCACTCCTTTGCTAGCTTTCATGAGGAAGCTTTGGAGTACATGAATTTTTCTACAGAGTCATGCCAATCTATGGTTAATGTGCCTGTCGATATTGATGGTGAAGAGGGTTTTGGAAATTTGTTAAACTGGAATTTCACAGAGATTTTGAGGGAGGGGTTTGTTTTGAGTTGGACTGCAAATAATTGTAGCTCTTGTGAGAGAAGTGGTGGGCGTTGTGGATTTGAAAACAATGAATTCATCTGTTTTTGCCAGGATCGCCCACATCTCAGAACTTGCCATGATGAGGGACTAAACTATCACAGGAAGGTTATTATAGGTGTTTGTGCTGGATTAGGTACTCTCCTTATTTCAAGCATTTTTTTCCTCATGTATCTACGCCGCTACAAGAAGCGCTATCCTCCACCTTTGTTCTCTCGAAATATCTCTTCTGATCCCTCTTCGAAGACAATTTTTGAGAGCCAGGGCAGCTTACACGGAGTCCATATATTCACTTACGAAGAACTTGAAGAAGCCACTAACAATTTTGATTCCAGCAAAGAACTAGGAGATGGAGGCTTTGGCACCGTATATCATGGCAAACTCCGTGATGGTCGTGTTGTTGCTGTGAAGCGCTTATATGAAAACAATTACAAGAGGGTTGAGCAGTTCATGAATGAAGTTGAGATCCTCCAACTTTTGCGCCACCGAAACCTAGTCTCCCTATATGGGTGCACCTCTCGCCACAGCAGAGAGCTCCTCCTTGTATATGAATACGTTCCTAACGGTACTGTTGCTGATCATCTTCACGGTGAACAAGCTAAACCTGGATCACTCACATGGCCAACTCGAATGAAAATTGCCATAGAGACTGCAAGTGCATTGAAATATCTCCATGCTTCTGATATCATCCACCGTGATGTCAAAACCAACAATATTCTCCTTGACAGCAACTTCTCTGTGAAAGTTGCAGATTTTGGGCTGTCCCGTCTCTTCCCGACAGATGTTACCCATGTTTCAACTGCTCCACAAGGAACTCCTGGATATGTTGATCCCGATTATCACCAATGCTACCAGCTTACAAGCAAGAGTGACGTCTATAGCTTTGGGGTGGTCCTGATTGAGCTTATATCATCCATGCCTGCTGTTGATATCACTAGGCACCGGCATGAGATTAACTTGTCTAACATGGCTATCAACAAGATCCAAAACCATGCATTGCATGAACTTGTTGACCGTTCCCTTGGGTTTGATTCAGACCAGAACATAAGGAGGATGATAATGGCAGTGGCAGAGTTGGCATTTCAGTGTTTGCAAAATGAGAAGGAAATGAGACCTGCTATGGATGAAGTGCTTGAGGTTCTAATGGGCATTGAGAGTGAGGGTTGCAATATAGTAAAGACAGAGGAGGTGGAGATTCCAGCAGACAGTGTTGGGTTGTTGAAGAGTAAGCAACCACCAGCTTCACCGGATTCTGTGACTACAAATTGGACTAGTTGGCCCTCAACTACTAATGGCAGCAGCTGA 2922 43.02 MGSKLFQSFILHSPITTFFFIFIAIPMCFCVDNQQYEECTSSLYECGDMKGIGYPFWGDGRPKFCGQQGFELKCQNDDYPLIDIGSLEFRVLNISNSTYAMRIARKDFWDQTCPKEFQSTTLNYTLFDYAGTDRNLTLFYGCPDDVLSQLPATWNISNNFTCSVEDINDTTAFYADEAFLGLDQHLAILRTCKINVTLPVLGAAIDELNANRTGGEFSNGERLEKAMNMGFDVDYSVVRGLCVHCNTTGGICGSSSTSSFSCLCRDKSYPYSCQKSEAKPTPLKLSSNAPLQLPTFLHLLCFPLFSLSIPLQMDAQNIFIWKSTFCIIVVIIIFTSFVIETLSADPKFEACKPHNCGTGPNVSYPFWIPKEQESYCGFPNFSITCNDEKPVLTISDDYYVIREIFYTNHSFLMSNSAVYDGDSCPTPLHNFSLDRTPFNYSPSHYDLLLFYNCTSVPVETLTIPIDCMSNATLHSFASFHEEALEYMNFSTESCQSMVNVPVDIDGEEGFGNLLNWNFTEILREGFVLSWTANNCSSCERSGGRCGFENNEFICFCQDRPHLRTCHDEGLNYHRKVIIGVCAGLGTLLISSIFFLMYLRRYKKRYPPPLFSRNISSDPSSKTIFESQGSLHGVHIFTYEELEEATNNFDSSKELGDGGFGTVYHGKLRDGRVVAVKRLYENNYKRVEQFMNEVEILQLLRHRNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGEQAKPGSLTWPTRMKIAIETASALKYLHASDIIHRDVKTNNILLDSNFSVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPDYHQCYQLTSKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNMAINKIQNHALHELVDRSLGFDSDQNIRRMIMAVAELAFQCLQNEKEMRPAMDEVLEVLMGIESEGCNIVKTEEVEIPADSVGLLKSKQPPASPDSVTTNWTSWPSTTNGSS* 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3220545 3228158 - Vvi17g289 Vvi17g289 778986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g289 973 Gene3D Phosphorylase Kinase; domain 1 620 724 - -
Vvi17g289 973 ProSiteProfiles Protein kinase domain profile. 648 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g289 973 Gene3D Transferase(Phosphotransferase) domain 1 725 932 - -
Vvi17g289 973 MobiDBLite consensus disorder prediction 952 973 - -
Vvi17g289 973 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 283 IPR044652 -
Vvi17g289 973 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 326 964 IPR044652 -
Vvi17g289 973 SUPERFAMILY Protein kinase-like (PK-like) 624 921 IPR011009 -
Vvi17g289 973 SMART serkin_6 648 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g289 973 Pfam Wall-associated receptor kinase C-terminal 175 267 IPR032872 -
Vvi17g289 973 Pfam Wall-associated receptor kinase C-terminal 481 558 IPR032872 -
Vvi17g289 973 MobiDBLite consensus disorder prediction 943 973 - -
Vvi17g289 973 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 326 964 - -
Vvi17g289 973 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 14 283 - -
Vvi17g289 973 Pfam Protein tyrosine and serine/threonine kinase 651 919 IPR001245 GO:0004672|GO:0006468
Vvi17g289 973 Pfam Wall-associated receptor kinase galacturonan-binding 39 105 IPR025287 GO:0030247
Vvi17g289 973 Pfam Wall-associated receptor kinase galacturonan-binding 351 412 IPR025287 GO:0030247
Vvi17g289 973 CDD STKc_IRAK 654 923 - -
Vvi17g289 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Vvi17g289 973 ProSitePatterns Protein kinases ATP-binding region signature. 654 676 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g858 Vvi17g289 ECH
Vvi1g344 Vvi17g289 ECH
Vvi1g347 Vvi17g289 ECH
Vvi14g861 Vvi17g289 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76312 PF07714 PK_Tyr_Ser-Thr 9.90E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g289 - - vri:117904184 1241.1