Doc-Alignment

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Cucurbitales genomes. We used V.vinifera as a reference, and by comparing homologous gene locus maps and Ks values between V.vinifera and other Cucurbitales, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created a hierarchical lists of homologous genes using V.vinifera as a reference.
  The relevant gene ids can be obtained from the Cucurbitales blast and match under the Tools module. This link is Cucurbitales blast and match.

Orthogroup analysis platform
Valid last name is required.
    
Valid last name is required.
Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1084 . . . . . . . . . . . . . . . . Cpe16g00719 . . . . . . . Cla02g01816 Cam02g1922 Cec02g1943 Cco02g1987 Clacu02g1904 Cmu02g1851 Cre02g2165 . . . . . . . Cme11g01598 . . . . . . . Bma12g00594 . . . . . . . . Cpe05g01035 Bhi10g00960 Tan05g0605 . . Hepe08g0632 . . . . . . . . . . Csa06g01166 . .
Vvi19g1085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1086 . . . . . . Bma08g00813 . . . . . . . . Cpe04g00858 . Bhi05g02021 . . . . . . . . . . . . . . . . . . Csa07g01188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00875 Cme01g01530
Vvi19g1087 . . . . Bpe07g00462 . . . . . . . . . . . Cpe16g00717 . . . . . . . Cla02g01817 Cam02g1923 Cec02g1948 . . Cmu02g1852 . . . . . . . . Cme11g01601 . . . . . . . Bma12g00592 . . . . . . . . . Bhi10g00958 . . . Hepe08g0633 . . . . . . . . . . Csa06g01165 Chy11g01027 .
Vvi19g1088 . . . . Bpe07g00463 . . . . . . . . . . . Cpe16g00716 . . . . . . . Cla02g01818 Cam02g1924 Cec02g1950 Cco02g1990 Clacu02g1905 Cmu02g1853 Cre02g2168 . . . . . . . Cme11g01602 Blo15g00613 . . . . . . Bma12g00591 Sed01g0755 . . . . . . . . Bhi10g00956 Tan05g0601 Cmetu11g1730 . Hepe08g0634 . . . . . . . . . . Csa06g01163 Chy11g01028 .
Vvi19g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1090 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1092 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1093 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 2354 of 2365 Next

Gene_GFF

Select Chromosome Start End Strand Old_gene Gene Num
5 62020132 62030862 - XM_039031858.1 Bhi05g02021 2021
10 19607109 19609231 + XM_039044544.1 Bhi10g00956 956
10 19620294 19634561 + XM_039045634.1 Bhi10g00958 958
10 19636029 19640020 + XM_039047021.1 Bhi10g00960 960
15 14986763 15005054 - BLOR07007 Blo15g00613 613
8 45746917 45751604 + Bma028203.1 Bma08g00813 813
12 26059747 26061663 + Bma030505 Bma12g00591 591
12 26227960 26234838 + Bma007761.1 Bma12g00592 592
12 26536071 26538939 + Bma007766.1 Bma12g00594 594
7 7090849 7099137 - Bpe021297.2 Bpe07g00462 462
7 7181939 7183885 - Bpe021298.1 Bpe07g00463 463
2 32305307 32309490 - CaPI482276_02g019220.1 Cam02g1922 1922
2 32317903 32319195 - CaPI482276_02g019230.1 Cam02g1923 1923
2 32324202 32325654 - CaPI482276_02g019240.1 Cam02g1924 1924
2 32813680 32815980 - CcPI632755_02g019870.1 Cco02g1987 1987
2 32827622 32834217 - CcPI632755_02g019900.1 Cco02g1990 1990
2 37313951 37317477 - CePI673135_02g019430.1 Cec02g1943 1943
2 37331131 37332774 - CePI673135_02g019480.1 Cec02g1948 1948
2 37337862 37339327 - CePI673135_02g019500.1 Cec02g1950 1950
1 7834492 7840116 - Chy1G008750.1 Chy01g00875 875
11 14610199 14631440 - Chy11G196070.1 Chy11g01027 1027
11 14647236 14648622 - Chy11G196080.1 Chy11g01028 1028
2 32564920 32578262 - ClG42_02g0190400.10 Clacu02g1904 1904
2 32578456 32584806 - ClG42_02g0190500.10 Clacu02g1905 1905
2 33254295 33263095 - ClCG02G018560.2 Cla02g01816 1816
2 33270740 33277720 - ClCG02G018580.1 Cla02g01817 1817
2 33281143 33283274 - ClCG02G018590.1 Cla02g01818 1818
1 20244408 20250428 - MELO3C012622.2.1 Cme01g01530 1530
11 23791174 23797129 - MELO3C019653.2.1 Cme11g01598 1598
11 23800296 23812784 - MELO3C019652.2.1 Cme11g01601 1601
11 23825633 23827760 - MELO3C019651.2.1 Cme11g01602 1602
11 8848748 8850981 + PI0007590.1 Cmetu11g1730 1730
2 32427165 32429461 - CmPI595203_02g018510.1 Cmu02g1851 1851
2 32439177 32440987 - CmPI595203_02g018520.1 Cmu02g1852 1852
2 32445592 32447044 - CmPI595203_02g018530.1 Cmu02g1853 1853
4 7892184 7909984 + Cp4.1LG04g02310.1 Cpe04g00858 858
5 6785021 6798303 + Cp4.1LG05g10360.1 Cpe05g01035 1035
16 7299872 7302836 + Cp4.1LG16g07170.1 Cpe16g00716 716
16 7303726 7318010 + Cp4.1LG16g07240.1 Cpe16g00717 717
16 7324114 7338174 + Cp4.1LG16g07250.1 Cpe16g00719 719
2 35256927 35266854 - CrPI670011_02g021650.1 Cre02g2165 2165
2 35273604 35285290 - CrPI670011_02g021680.1 Cre02g2168 2168
6 9762144 9764899 + CsaV3_6G013610.1 Csa06g01163 1163
6 9773091 9783770 + CsaV3_6G013630.1 Csa06g01165 1165
6 9784109 9789386 + CsaV3_6G013640.1 Csa06g01166 1166
7 11663383 11669923 + CsaV3_7G022770.1 Csa07g01188 1188
8 5620740 5625096 - Hsped.08g06320.1 Hepe08g0632 632
8 5625639 5636912 - Hsped.08g06330.1 Hepe08g0633 633
8 5638443 5641902 - Hsped.08g06340.1 Hepe08g0634 634
1 5575958 5579904 - Sed0018431.1 Sed01g0755 755
5 4406422 4408970 + Tan0021682.1 Tan05g0601 601
5 4422876 4426018 + Tan0020086.3 Tan05g0605 605
19 21901989 21911420 - Vvi19g1084 Vvi19g1084 1084
19 21916037 21918539 - Vvi19g1085 Vvi19g1085 1085
19 21920856 21934724 + Vvi19g1086 Vvi19g1086 1086
19 21934771 21952939 - Vvi19g1087 Vvi19g1087 1087
19 21954862 21962081 - Vvi19g1088 Vvi19g1088 1088
19 21964514 21967349 - Vvi19g1089 Vvi19g1089 1089
19 22008382 22021510 + Vvi19g1090 Vvi19g1090 1090
19 22021510 22044521 - Vvi19g1091 Vvi19g1091 1091
19 22065408 22070479 - Vvi19g1092 Vvi19g1092 1092
19 22070986 22071806 + Vvi19g1093 Vvi19g1093 1093
       

DecoBrowse