Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00847 ATGAATCCAGATAAATTTACTCATAAGACCAATGAGATGATAGCTGGGGCTCATGAACTAGCTATGACTGCCGGTCATGCGCAATTCACTCCCCTTCATCTTGCAGTTTCTTTAATTAGTGATCCCAGTGGAATCTTTAGGCAAGCAATTGGCAATGCTAGAGGTGAAAACGCCCCTAAAGAAGTGGAGACGGTCTTAAATCGGGTTTTAAAGAAACTCCCATCACAAACCCCTCCTCCGGATGAGATTCCAGCAAGTTCTTCTCTGATCAAAGTAATTAGAAGGGCTCAAGCAGCACAAAAAACAAGAGGGGACACCCATTTAGCTGTAGATCAGCTGATTCTTGGTCTTCTTGAGGATTCTCAGATTGGAGACTTGTTGAAAGAAGCAGGTGTTGCTTCTGCATCAGTGAAGTCCGAGGTTGAAAAGCTTCGTGGAAAAGAAGGGAAGAAAGTAGAGAGTGCTTCTGGCGATACTACATTTCAAGCTTTGAAGACTTATGGTCGAGATCTCGTTGAACAAGCTGGAAAACTAGACCCAGTCATCGGGCGGGATGAGGAAATTAGAAGGGTGGTAAGAATTTTGTCAAGGAGAACCAAGAACAATCCTGTTCTTATCGGAGAGCCTGGAGTAGGTAAAACTGCAGTGGTTGAAGGATTGGCTCAAAGAATTGTGCGAGGAGACATCCCAAGTAATCTAACTGATGTGAGGCTCATTGCACTGGACATGGGTGCTTTAGTCGCTGGAGCTAAATATCGAGGGGAGTTCGAGGAGCGACTAAAGGCTGTTTTGAAAGAAGTAGAAGAAGCATGTGGAAAAGTGATATTGTTCATTGATGAAATTCACTTAGTCTTGGGTGCTGGCCGTACAGAGGGCTCTATGGATGCTGCCAATCTCTTCAAGCCAATGCTTGCTAGAGGTCAGCTTCGTTGTATTGGAGCAACTACACTTGAAGAATACAGAAAATATGTGGAGAAAGATGCAGCATTTGAGAGACGATTTCAGCAGGTGTATGTGGCTGAACCCAGCGTCCCAGATACAATCAGTATTCTTCGAGGGTTGAAAGAGAGATATGAAGGTCATCATGGTGTTAGAATACAAGATCGAGCTCTTATCGTTGCAGCTCAGCTTTCTAGTCGATACATTTCAGGTCGTCATCTTCCTGATAAGGCGATTGATTTAGTTGATGAAGCCTGTGCAAATGTCAGAGTCCAGCTTGACAGTCAGCCAGAAGAAATTGATAACTTGGAAAGGAAGAGAATGCAGCTTGAAATTGAGCTTCATGCACTTGAGAAGGAGAAGGACAAATCTAGCAAAGCTCGTCTTGTTGAAGTGAGGAAAGAGCTTGATGATTTGAGAGATAAGCTTCAGCCCCTATTAATGAAATACAGAAAGGAGAAAGAAAGGATTGATGAGATTCGAAGATTAAAACAGAAAAGGGAAGAGCTTCAGATTGCACTACAAGAGGCTGAAAGAAGATATGATTTAGCCAGGGCTGCAGATTTGCGATATGGTGCAATACAAGATGTGGAAACAGCCATTGCACGAATTGAAGGCAACACAGATGAAAACTTAATGTTGACAGAGACTGTCGGACCTGAGCACATAGCAGAGGTTGTGAGCCGTTGGACTAGTATTCCTGTCACTCGACTTGGCCAGAATGAGAAAGAAAGGATGATTGGGCTTGCTGAGAGGCTGCACAAGAGAGTGGTAGGTCAAGACCAAGCTGTCGATGCAGTGGCAGAGGCAGTCTTAAGGTCAAGGGCGGGTTTAGGAAGGCCGCAACAGCCAACTGGCTCCTTTCTCTTTCTGGGTCCTACTGGTGTCGGCAAGACTGAGCTTGCAAAGGCTTTGGCAGAGCAACTCTTTGATGACGAAAATCTACTTGTGCGAATTGACATGTCAGAGTATATGGAGCAACACTCTGTTTCTCGCCTGATTGGTGCTCCTCCTGGTTATGTTGGACATGAAGAAGGTGGACAACTTACCGAGGCAGTGAGGAGAAGACCTTACAGTGTTGTGCTTTTTGATGAAGTGGAGAAAGCTCACATCTCTGTCTTCAACACTCTTCTTCAAGTTTTAGATGATGGAAGATTAACAGATGGTCAAGGTCAAACCGTCGATTTCAGAAACACAATAATTATTATGACTTCAAACCTCGGAGCCGATCATCTTCGATCAGGTTTATCGGGTAAATCCACCATGCAAGTAGCTCGAGAGCGGGTTTTGCAAGAGGTGAGAAGACACTTCAGGCCGAAGTTGCTCAATCGACTTGATGAAATAGTAGTCTTTGATCCTCTTTCACACGACCAATTGAGGAAGGTGGCTCGATTACAAATGAAATAG 2346 44.37 MNPDKFTHKTNEMIAGAHELAMTAGHAQFTPLHLAVSLISDPSGIFRQAIGNARGENAPKEVETVLNRVLKKLPSQTPPPDEIPASSSLIKVIRRAQAAQKTRGDTHLAVDQLILGLLEDSQIGDLLKEAGVASASVKSEVEKLRGKEGKKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDIPSNLTDVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEACGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALIVAAQLSSRYISGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKSSKARLVEVRKELDDLRDKLQPLLMKYRKEKERIDEIRRLKQKREELQIALQEAERRYDLARAADLRYGAIQDVETAIARIEGNTDENLMLTETVGPEHIAEVVSRWTSIPVTRLGQNEKERMIGLAERLHKRVVGQDQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGQTVDFRNTIIIMTSNLGADHLRSGLSGKSTMQVARERVLQEVRRHFRPKLLNRLDEIVVFDPLSHDQLRKVARLQMK 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8104314 8147357 + Bma017163.1 Bma03g00847 79520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00847 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 781 IPR027417 -
Bma03g00847 781 Gene3D - 3 148 IPR036628 -
Bma03g00847 781 CDD AAA 571 766 - -
Bma03g00847 781 Gene3D - 550 766 IPR027417 -
Bma03g00847 781 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 708 722 IPR001270 GO:0005524
Bma03g00847 781 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 601 619 IPR001270 GO:0005524
Bma03g00847 781 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 675 693 IPR001270 GO:0005524
Bma03g00847 781 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 646 664 IPR001270 GO:0005524
Bma03g00847 781 Pfam AAA domain (Cdc48 subfamily) 597 761 IPR003959 GO:0005524|GO:0016887
Bma03g00847 781 SUPERFAMILY Double Clp-N motif 4 157 IPR036628 -
Bma03g00847 781 SMART AAA_5 199 344 IPR003593 -
Bma03g00847 781 SMART AAA_5 597 743 IPR003593 -
Bma03g00847 781 Gene3D - 344 544 IPR027417 -
Bma03g00847 781 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Bma03g00847 781 Pfam ATPase family associated with various cellular activities (AAA) 204 317 IPR003959 GO:0005524|GO:0016887
Bma03g00847 781 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Bma03g00847 781 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Bma03g00847 781 Pfam Clp amino terminal domain, pathogenicity island component 17 58 IPR004176 -
Bma03g00847 781 PANTHER ATP-DEPENDENT CLP PROTEASE 4 780 - -
Bma03g00847 781 Pfam AAA lid domain 344 443 IPR041546 -
Bma03g00847 781 CDD AAA 182 337 - -
Bma03g00847 781 Coils Coil 406 440 - -
Bma03g00847 781 Coils Coil 463 500 - -
Bma03g00847 781 ProSitePatterns Chaperonins clpA/B signature 2. 631 649 IPR028299 -
Bma03g00847 781 Gene3D - 150 343 IPR027417 -
Bma03g00847 781 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 780 - -
Bma03g00847 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 544 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00847 Bma06g00155 CCT
Bma03g00847 Bma06g00166 CCT
Bma03g00847 Bma08g00280 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00847 Bma-Chr3:8104314 Bma07g01574 Bma-Chr7:51089426 3.20E-22 dispersed
Bma01g01266 Bma-Chr1:17142392 Bma03g00847 Bma-Chr3:8104314 0 transposed
Bma08g00280 Bma-Chr8:3794538 Bma03g00847 Bma-Chr3:8104314 0 transposed
Bma03g00847 Bma-Chr3:8104314 Bma06g00155 Bma-Chr6:2018170 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00847 K03695 - csv:101221981 1383.24